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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_17200 and AO353_17205 overlap by 1 nucleotides
AO353_17205 and AO353_17210 are separated by 39 nucleotides
AO353_17210 and AO353_17215 are separated by 1 nucleotides
AO353_17215 and AO353_17220 are separated by 254 nucleotides
AO353_17200: AO353_17200 - 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6)
(from data)
, at 3,803,571 to 3,804,350
_17200
AO353_17205: AO353_17205 - beta-ketoadipyl CoA thiolase, at 3,804,350 to 3,805,552
_17205
AO353_17210: AO353_17210 - protocatechuate 3,4-dioxygenase, at 3,805,592 to 3,806,296
_17210
AO353_17215: AO353_17215 - protocatechuate 3,4-dioxygenase, at 3,806,298 to 3,806,864
_17215
AO353_17220: AO353_17220 - alpha-ketoglutarate permease, at 3,807,119 to 3,808,414
_17220
Group
Condition
AO353
_17200
AO353
_17205
AO353
_17210
AO353
_17215
AO353
_17220
carbon source
L-Tryptophan (C)
-2.5
-2.4
+0.3
-0.0
-0.8
carbon source
L-Ornithine
+0.5
-3.8
+0.0
-0.8
+0.0
nitrogen source
Parabanic Acid (N)
+0.2
-3.9
+0.0
+0.2
-0.1
stress
Doxycycline hyclate 0.0006 mg/ml
+0.0
-2.0
+0.2
-1.2
+0.1
stress
Sisomicin 0.008 mg/ml
-0.3
-0.9
-0.6
-0.3
-0.1
stress
Lomefloxacin 0.001 mM
-0.7
-0.6
+0.0
-0.1
-0.3
carbon source
m-Inositol (C)
-0.5
-0.9
+0.1
+0.1
-0.1
carbon source
butyrate (C)
-0.2
-1.2
-0.1
+0.3
+0.0
carbon source
Glycerol (C)
-0.3
-1.0
-0.0
+0.2
-0.0
carbon source
Carnitine Hydrochloride (C)
-0.5
-1.0
+0.3
+0.1
+0.0
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.3
-1.3
+0.4
+0.2
+0.0
stress
Paraquat dichloride 0.032 mg/mL
-0.8
-0.4
-0.1
+0.3
+0.0
survival
4C survival; 360 hrs
+0.2
-0.5
+0.3
-0.4
-0.2
carbon source
L-Citrulline
+0.5
-0.8
-0.4
+0.1
+0.1
carbon source
acetate (C)
-0.8
-0.4
+0.2
+0.3
+0.1
stress
Cisplatin 0.006 mg/ml
-0.3
+1.0
-0.3
-0.7
-0.0
carbon source
L-Valine (C)
-0.2
+1.0
-0.4
-0.0
-0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron
-1.6
+0.8
+0.5
+0.6
+0.3
stress
methylglyoxal 0.008 vol%
-0.2
+1.1
+0.3
-0.2
-0.1
survival
4C survival; 672 hrs
+0.8
+0.0
+0.5
-0.2
-0.1
carbon source
L-Ornithine
+0.4
+1.4
-0.2
-0.3
+0.0
carbon source
D-Glucose
+0.5
+0.4
-0.1
+0.4
+0.2
carbon source
L-Citrulline
+0.4
+0.6
+0.6
-0.3
+0.1
carbon source
Cytidine (C)
+0.5
+0.7
+0.1
+0.1
-0.0
carbon source
D-Glucose
+0.4
+0.7
+0.4
-0.2
+0.2
lb
LB
+0.4
+1.1
+0.1
-0.0
+0.0
carbon source
L-Citrulline
+0.8
+0.8
-0.3
+0.6
-0.1
carbon source
L-Citrulline
+0.3
+1.1
+0.1
+0.4
-0.0
carbon source
D-Ribose (C)
+0.7
+1.3
-0.0
+0.0
+0.1
carbon source
D-Ribose (C)
+1.0
+1.5
+0.2
-0.1
+0.1
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