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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_17115 and AO353_17120 overlap by 4 nucleotides
AO353_17120 and AO353_17125 are separated by 231 nucleotides
AO353_17125 and AO353_17130 are separated by 347 nucleotides
AO353_17130 and AO353_17135 are separated by 233 nucleotides
AO353_17115: AO353_17115 - leucine/isoleucine/valine transporter permease subunit, at 3,781,093 to 3,782,349
_17115
AO353_17120: AO353_17120 - branched-chain amino acid transporter permease subunit LivH, at 3,782,346 to 3,783,269
_17120
AO353_17125: AO353_17125 - leucine ABC transporter substrate-binding protein, at 3,783,501 to 3,784,628
_17125
AO353_17130: AO353_17130 - hypothetical protein, at 3,784,976 to 3,785,281
_17130
AO353_17135: AO353_17135 - hypothetical protein, at 3,785,515 to 3,787,692
_17135
Group
Condition
AO353
_17115
AO353
_17120
AO353
_17125
AO353
_17130
AO353
_17135
carbon source
L-Isoleucine (C)
-1.5
-1.5
-1.6
-1.4
-0.0
carbon source
L-Leucine (C)
-1.6
-1.6
-1.3
-1.0
-0.3
nitrogen source
L-Phenylalanine (N)
-1.3
-1.0
-0.9
-0.1
-0.0
carbon source
L-Citrulline (C)
-0.8
-0.8
-0.7
+0.2
-0.0
carbon source
L-Serine (C)
-0.6
-0.6
-0.5
-0.4
-0.1
nitrogen source
L-tyrosine (N)
-0.7
-0.9
-0.7
+0.2
+0.1
carbon source
L-Valine (C)
-0.2
-0.6
+0.0
-1.0
-0.1
nitrogen source
D-Alanine (N)
-0.6
-0.5
-0.4
+0.0
-0.1
carbon source
L-Citrulline
-0.3
-0.2
-0.6
-0.2
+0.0
carbon source
L-Proline (C)
-0.4
-0.4
-0.1
-0.1
+0.1
carbon source
L-Citrulline
+0.1
-0.2
-0.1
-0.9
+0.2
nitrogen source
Parabanic Acid (N)
-0.5
-0.5
+0.0
+0.0
+0.0
carbon source
L-Proline (C)
-0.3
-0.2
-0.1
-0.3
+0.1
stress
Sisomicin 0.008 mg/ml
+0.1
-0.0
+0.1
-0.9
+0.0
carbon source
Cytidine (C)
-0.2
-0.2
+0.2
-0.4
-0.0
stress
Thallium(I) acetate 0.008 mg/ml
+0.3
-0.1
-0.3
-0.5
+0.1
motility
outer cut, LB soft agar motility assay
-0.1
-0.3
-0.3
+0.3
-0.0
stress
methylglyoxal 0.009 vol%
-0.3
+0.1
-0.2
+0.5
-0.2
carbon source
L-Alanine (C)
-0.0
+0.1
+0.5
-0.6
-0.0
stress
Lomefloxacin 0.001 mM
+0.1
-0.2
+0.4
-0.1
-0.3
stress
Doxycycline hyclate 0.0006 mg/ml
-0.1
-0.3
-0.2
+0.4
+0.3
carbon source
propionate (C)
+0.2
+0.5
+0.2
-0.6
-0.0
stress
Furfuryl Alcohol 0.25 vol%
-0.3
-0.1
+0.1
+0.6
+0.0
carbon source
propionate (C)
+0.3
+0.5
+0.4
-0.6
-0.2
carbon source
D-Glucose
+0.4
+0.4
+0.3
-0.2
-0.1
carbon source
L-Ornithine
+0.1
+0.4
+0.5
+0.0
-0.1
carbon source
L-Ornithine
+0.3
+0.5
+0.5
-0.3
+0.0
carbon source
L-Ornithine
+0.4
+0.5
+0.6
-0.2
-0.2
carbon source
Carnitine Hydrochloride (C)
+0.2
+0.4
+0.5
-0.0
+0.0
carbon source
L-Ornithine
+0.3
+0.6
+0.5
+0.2
+0.1
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