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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_17005 and AO353_17010 overlap by 8 nucleotides
AO353_17010 and AO353_17015 are separated by 187 nucleotides
AO353_17015 and AO353_17020 are separated by 99 nucleotides
AO353_17020 and AO353_17025 are separated by 95 nucleotides
AO353_17005: AO353_17005 - hypothetical protein, at 3,759,397 to 3,759,675
_17005
AO353_17010: AO353_17010 - collagen pro alpha-chain precursor, at 3,759,668 to 3,760,426
_17010
AO353_17015: AO353_17015 - hypothetical protein, at 3,760,614 to 3,761,078
_17015
AO353_17020: AO353_17020 - ATP-dependent DNA helicase DinG, at 3,761,178 to 3,763,322
_17020
AO353_17025: AO353_17025 - beta-agarase, at 3,763,418 to 3,765,820
_17025
Group
Condition
AO353
_17005
AO353
_17010
AO353
_17015
AO353
_17020
AO353
_17025
motility
outer cut, LB soft agar motility assay
-1.1
-0.7
+0.3
-0.9
-1.9
stress
methylglyoxal 0.008 vol%
-0.7
-0.2
-0.3
-2.0
+0.0
motility
outer cut, LB soft agar motility assay
-0.1
-0.2
+0.2
-0.7
-1.8
survival
4C survival; 672 hrs
+0.5
-0.1
+0.1
-0.9
-1.7
stress
Cisplatin 0.006 mg/ml
-0.5
-0.0
-0.3
-2.2
+0.9
survival
4C survival; 192 hrs
-0.1
-0.2
-0.1
-0.4
-0.9
carbon source
Ethanol (C)
-1.1
-0.0
-0.3
-0.1
-0.1
pH
Minimal media pH9
-0.2
-0.2
-1.0
-0.0
-0.3
survival
4C survival; 360 hrs
+0.6
-0.3
+0.1
-0.3
-1.4
carbon source
L-Phenylalanine (C)
+0.0
-0.6
-0.5
-0.4
+0.3
stress
copper (II) chloride 2.5 mM
+0.2
-0.3
-0.5
-0.3
-0.3
nitrogen source
L-Serine (N)
-1.5
+0.1
+0.2
-0.0
+0.1
stress
Lomefloxacin 0.001 mM
+0.9
-0.1
-0.3
-1.7
+0.3
motility
outer cut, LB soft agar motility assay
+1.2
-0.0
+0.2
-0.2
-2.0
stress
Cisplatin 0.006 mg/ml
+0.5
+0.3
+0.2
-2.6
+0.7
stress
sodium fluoride 6.25 mM
-0.7
-0.4
+0.2
+0.3
-0.1
stress
Tetracycline 0.0016 mg/ml
-0.8
-0.1
-0.5
+0.2
+0.8
stress
Cholin acetate 19 mM
+0.8
-0.0
-0.2
-0.3
-0.6
stress
acetate 68 mM
+0.7
+0.4
-0.0
-0.2
-0.8
stress
acetate 17 mM
+0.9
-0.2
+0.2
-0.3
-0.4
stress
Fusidic 0.125 mg/ml
-0.2
+0.2
-0.3
-0.4
+1.2
carbon source
propionate (C)
+0.6
+0.3
+0.5
-0.1
-0.8
stress
Choline Lysine 12 mM
+0.8
+0.1
+0.4
-0.2
-0.5
stress
1-ethyl-3-methylimidazolium acetate 30 mM
+1.0
+0.1
+0.3
-0.1
-0.6
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.6
+0.3
+0.4
-0.1
-0.5
stress
methylglyoxal 0.009 vol%
+0.7
+0.3
-0.2
-0.5
+1.0
nitrogen source
L-tyrosine (N)
+0.3
+0.4
-0.2
-0.0
+1.0
stress
Nalidixic 0.004 mg/ml
+0.5
+0.4
+0.0
+0.6
+0.1
stress
Doxycycline hyclate 0.0006 mg/ml
+0.2
+0.6
+0.3
-0.1
+0.8
stress
Benzalkonium Chloride 0.012 mg/ml
+0.7
+0.3
+0.1
+0.3
+0.7
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