Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_16950 and AO353_16955 are separated by 13 nucleotidesAO353_16955 and AO353_16960 are separated by 27 nucleotidesAO353_16960 and AO353_16965 overlap by 4 nucleotidesAO353_16965 and AO353_16970 are separated by 58 nucleotides AO353_16950: AO353_16950 - amino acid transporter, at 3,749,517 to 3,750,281 _16950 AO353_16955: AO353_16955 - succinylglutamate desuccinylase, at 3,750,295 to 3,751,413 _16955 AO353_16960: AO353_16960 - amino acid ABC transporter permease, at 3,751,441 to 3,752,151 _16960 AO353_16965: AO353_16965 - amino acid ABC transporter permease, at 3,752,148 to 3,752,876 _16965 AO353_16970: AO353_16970 - ABC transporter substrate-binding protein, at 3,752,935 to 3,753,714 _16970
Group Condition AO353_16950 AO353_16955 AO353_16960 AO353_16965 AO353_16970
nitrogen source L-Lysine (N) N.D. -0.8 -1.3 -1.1 -1.2
nitrogen source L-Lysine (N) N.D. -0.3 -1.2 -1.1 -1.1
nitrogen source Uridine (N) N.D. -0.8 -0.3 -0.3 -0.5
anaerobic Anaerobic, acetate donor; nitrate and iron N.D. -1.5 +0.0 -0.3 +0.0
nitrogen source NAG (N) N.D. -0.7 -0.2 -0.0 -0.4
motility outer cut, LB soft agar motility assay N.D. -1.2 +0.1 -0.1 -0.1
carbon source propionate (C) N.D. -1.0 +0.1 -0.0 -0.3
nitrogen source Parabanic Acid (N) N.D. -0.6 -0.2 +0.0 -0.3
nitrogen source Thymine (N) N.D. -0.3 -0.2 -0.2 -0.4
stress Paraquat dichloride 0.032 mg/mL N.D. -1.2 +0.2 -0.0 +0.1
motility outer cut, LB soft agar motility assay N.D. -0.6 -0.3 +0.2 +0.0
stress Nickel (II) chloride 0.625 mM N.D. -0.5 +0.1 +0.2 -0.4
nitrogen source L-Threonine (N) N.D. -0.5 -0.2 +0.2 +0.2
nitrogen source L-Arginine (N) N.D. +0.4 -0.3 -0.0 -0.3
stress Doxycycline hyclate 0.0006 mg/ml N.D. +0.6 +0.4 -0.8 -0.4
motility outer cut, LB soft agar motility assay N.D. +0.2 +0.2 +0.1 -0.5
carbon source L-Ornithine N.D. -0.4 -0.3 +0.6 +0.1
carbon source Ethanol (C) N.D. +0.3 +0.2 -0.5 +0.3
stress acetate 17 mM N.D. +0.4 +0.1 +0.2 -0.3
carbon source acetate (C) N.D. +0.3 +0.2 +0.5 -0.1
pH Minimal media pH9 N.D. -0.1 -0.1 +0.6 +0.5
carbon source L-Ornithine N.D. -0.2 +0.3 +0.7 +0.2
carbon source L-Citrulline (C) N.D. +0.1 +0.2 +0.4 +0.3
stress Cisplatin 0.006 mg/ml N.D. +0.5 +0.4 +0.5 -0.2
stress Cisplatin 0.006 mg/ml N.D. +0.3 +0.2 +0.1 +0.6
carbon source L-Citrulline N.D. +0.1 +0.6 +0.4 +0.7
carbon source L-Citrulline N.D. +0.3 +0.4 +0.7 +0.6
carbon source L-Citrulline N.D. -0.1 +0.7 +0.7 +0.8
carbon source L-Citrulline N.D. +0.3 +0.6 +0.7 +0.8
anaerobic N1B4wt with N2E3m denitrifying replicate C N.D. +0.7 +0.8 +0.4 +0.3
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