Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_16925 and AO353_16930 are separated by 43 nucleotidesAO353_16930 and AO353_16935 are separated by 156 nucleotidesAO353_16935 and AO353_16940 are separated by 355 nucleotidesAO353_16940 and AO353_16945 are separated by 107 nucleotides AO353_16925: AO353_16925 - AmpG family muropeptide MFS transporter, at 3,745,801 to 3,747,363 _16925 AO353_16930: AO353_16930 - DNA base-flipping protein YbaZ, at 3,747,407 to 3,747,760 _16930 AO353_16935: AO353_16935 - cold-shock protein, at 3,747,917 to 3,748,126 _16935 AO353_16940: AO353_16940 - deoxycytidine triphosphate deaminase, at 3,748,482 to 3,749,048 _16940 AO353_16945: AO353_16945 - hypothetical protein, at 3,749,156 to 3,749,374 _16945
Group Condition AO353_16925 AO353_16930 AO353_16935 AO353_16940 AO353_16945
motility outer cut, LB soft agar motility assay -2.0 -0.7 N.D. -2.0 N.D.
motility outer cut, LB soft agar motility assay -1.9 +0.0 N.D. -1.8 N.D.
nitrogen source D-Serine (N) -0.1 -0.2 N.D. -3.4 N.D.
carbon source Trisodium citrate (C) -0.2 -0.5 N.D. -2.9 N.D.
carbon source D-Lactate (C) -0.0 -0.3 N.D. -3.3 N.D.
pH Minimal media pH6 -0.5 +0.0 N.D. -3.1 N.D.
carbon source D-Glucose (C) -0.0 -0.2 N.D. -3.3 N.D.
carbon source L-Citrulline (C) -1.2 -0.0 N.D. -2.2 N.D.
carbon source Trisodium citrate (C) -0.1 -0.1 N.D. -3.2 N.D.
pH Minimal media pH6 -0.4 -0.2 N.D. -2.8 N.D.
pH Minimal media pH8 +0.0 +0.0 N.D. -3.4 N.D.
carbon source L-Glutamine (C) -0.1 -0.7 N.D. -2.6 N.D.
carbon source D,L-Lactate (C) +0.0 -0.1 N.D. -3.2 N.D.
carbon source Carnitine Hydrochloride (C) -1.2 -0.2 N.D. -1.8 N.D.
carbon source D,L-Lactate (C) -0.1 -0.1 N.D. -3.1 N.D.
nitrogen source Ammonium chloride (N) +0.1 -0.2 N.D. -3.1 N.D.
pH Minimal media pH7 +0.1 -0.3 N.D. -3.0 N.D.
carbon source D-Gluconic Acid (C) +0.1 +0.2 N.D. -3.2 N.D.
carbon source Fumarate (C) +0.2 -0.1 N.D. -3.0 N.D.
carbon source a-Ketoglutaric (C) +0.4 -0.1 N.D. -3.0 N.D.
stress 1-ethyl-3-methylimidazolium acetate 30 mM +0.3 -0.3 N.D. -2.6 N.D.
pH Minimal media pH8 +0.2 +0.3 N.D. -2.7 N.D.
carbon source L-Valine (C) -1.1 +0.7 N.D. -1.8 N.D.
pH Minimal media pH9 +0.7 +0.5 N.D. -2.8 N.D.
carbon source propionate (C) +1.2 -0.0 N.D. -2.2 N.D.
stress Doxycycline hyclate 0.0002 mg/ml +2.5 +0.2 N.D. -1.4 N.D.
stress Tetracycline 0.0016 mg/ml +2.4 +0.7 N.D. -1.7 N.D.
stress Doxycycline hyclate 0.0006 mg/ml +4.2 +0.7 N.D. -1.0 N.D.
stress Rifampicin 0.005 mg/ml +3.3 +0.4 N.D. +0.9 N.D.
stress Fusidic 0.125 mg/ml +2.0 +0.6 N.D. +2.6 N.D.
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