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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_16865 and AO353_16870 are separated by 83 nucleotides
AO353_16870 and AO353_16875 are separated by 115 nucleotides
AO353_16875 and AO353_16880 are separated by 322 nucleotides
AO353_16880 and AO353_16885 are separated by 59 nucleotides
AO353_16865: AO353_16865 - RNA-binding protein, at 3,731,098 to 3,731,808
_16865
AO353_16870: AO353_16870 - acetyltransferase, at 3,731,892 to 3,732,365
_16870
AO353_16875: AO353_16875 - ribosomal protein S12 methylthiotransferase RimO, at 3,732,481 to 3,733,815
_16875
AO353_16880: AO353_16880 - potassium transporter Kup, at 3,734,138 to 3,736,042
_16880
AO353_16885: AO353_16885 - hypothetical protein, at 3,736,102 to 3,736,428
_16885
Group
Condition
AO353
_16865
AO353
_16870
AO353
_16875
AO353
_16880
AO353
_16885
pH
Minimal media pH6
-0.4
-0.2
-0.1
-1.2
-0.5
carbon source
Carnitine Hydrochloride (C)
-0.1
-0.1
+0.1
-2.3
-0.0
carbon source
D-Glucose
-0.3
-0.1
-0.7
-0.2
-0.7
carbon source
L-Isoleucine (C)
-0.4
-0.6
+0.1
-0.5
-0.7
carbon source
L-Ornithine
-0.4
-0.9
-0.3
-0.1
-0.3
stress
Benzalkonium Chloride 0.01 mg/ml
-0.3
-0.1
-0.6
-0.1
-0.8
carbon source
propionate (C)
-0.3
-0.3
-0.8
-0.5
-0.0
carbon source
D-Serine (C)
-0.4
+0.2
-0.4
-0.2
-1.0
carbon source
D-Glucose
-0.3
-0.2
-0.4
-0.4
-0.4
carbon source
L-Valine (C)
-0.6
-0.7
-0.7
-0.0
+0.3
pH
Minimal media pH6
-0.2
+0.0
-0.2
-1.0
-0.1
stress
Paraquat dichloride 0.032 mg/mL
-0.3
+0.2
-0.9
-0.0
-0.5
carbon source
acetate (C)
+0.5
-0.2
-1.2
-0.3
-0.2
stress
copper (II) chloride 2.5 mM
-0.0
-0.6
+0.3
-0.8
+0.1
carbon source
L-Citrulline
-0.7
+0.4
-0.4
-0.2
-0.0
denitrifying
Nitrate reduction, replicate B
-0.2
-0.7
-0.1
-0.2
+0.3
carbon source
L-Serine (C)
+0.1
-0.7
-0.4
-0.2
+0.4
stress
Cisplatin 0.006 mg/ml
-0.7
-0.5
-0.3
-0.0
+0.8
carbon source
acetate (C)
+0.1
+0.2
-1.0
-0.1
+0.1
pH
Minimal media pH9
-0.4
-0.2
-0.5
+0.1
+0.4
stress
methylglyoxal 0.009 vol%
-0.4
-0.2
-0.5
+0.6
-0.2
stress
Doxycycline hyclate 0.0006 mg/ml
+0.5
+0.3
-1.0
-0.4
+0.1
carbon source
Putrescine (C)
-0.1
+0.6
-0.1
-0.5
-0.4
stress
Sisomicin 0.008 mg/ml
-0.2
+0.3
+1.4
-1.0
-0.8
carbon source
L-Citrulline
-0.3
-0.4
+0.7
-0.2
+0.0
stress
sodium fluoride 6.25 mM
+0.4
+0.2
-0.9
+0.4
-0.2
carbon source
D-Ribose (C)
-0.1
+0.1
-0.6
+0.7
-0.0
motility
outer cut, LB soft agar motility assay
+0.1
-0.4
+0.7
-0.4
+0.2
denitrifying
Nitrate reduction, replicate C
+0.2
-0.1
+0.3
-0.5
+0.4
stress
perchlorate 75 mM
+0.3
+0.3
+0.2
+0.1
-0.4
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