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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_16565 and AO353_16570 overlap by 4 nucleotides
AO353_16570 and AO353_16575 are separated by 621 nucleotides
AO353_16575 and AO353_16580 are separated by 106 nucleotides
AO353_16580 and AO353_16585 are separated by 8 nucleotides
AO353_16565: AO353_16565 - cell division protein FtsB, at 3,681,187 to 3,681,465
_16565
AO353_16570: AO353_16570 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 3,681,462 to 3,682,169
_16570
AO353_16575: AO353_16575 - LysR family transcriptional regulator, at 3,682,791 to 3,683,687
_16575
AO353_16580: AO353_16580 - S-(hydroxymethyl)glutathione dehydrogenase, at 3,683,794 to 3,684,906
_16580
AO353_16585: AO353_16585 - S-formylglutathione hydrolase, at 3,684,915 to 3,685,760
_16585
Group
Condition
AO353
_16565
AO353
_16570
AO353
_16575
AO353
_16580
AO353
_16585
stress
methylglyoxal 0.009 vol%
N.D.
N.D.
-0.8
-1.6
-2.7
stress
methylglyoxal 0.008 vol%
N.D.
N.D.
-0.8
-1.3
-2.8
stress
Furfuryl Alcohol 0.25 vol%
N.D.
N.D.
-0.8
-1.2
-2.5
nitrogen source
Carnitine Hydrochloride (N)
N.D.
N.D.
-0.5
-0.8
-0.6
carbon source
Carnitine Hydrochloride (C)
N.D.
N.D.
-0.4
-0.8
-0.4
stress
Furfuryl Alcohol 0.0625 vol%
N.D.
N.D.
-0.1
-0.4
-1.0
stress
Furfuryl Alcohol 0.125 vol%
N.D.
N.D.
-0.3
-0.5
-0.6
pH
Minimal media pH9
N.D.
N.D.
+0.4
-1.0
-0.6
carbon source
propionate (C)
N.D.
N.D.
+0.1
-0.7
-0.5
stress
Fusidic 0.125 mg/ml
N.D.
N.D.
-0.4
-0.6
+0.1
carbon source
propionate (C)
N.D.
N.D.
-0.1
-0.5
-0.2
stress
Cisplatin 0.006 mg/ml
N.D.
N.D.
-0.3
-0.2
-0.4
motility
outer cut, LB soft agar motility assay
N.D.
N.D.
-0.1
-0.3
-0.4
motility
outer cut, LB soft agar motility assay
N.D.
N.D.
+0.0
-0.3
-0.4
carbon source
acetate (C)
N.D.
N.D.
-0.0
-0.9
+0.2
carbon source
Trisodium citrate (C)
N.D.
N.D.
-0.1
-0.3
-0.2
carbon source
L-Ornithine
N.D.
N.D.
+0.0
-0.5
-0.2
carbon source
Trisodium citrate (C)
N.D.
N.D.
-0.1
-0.2
-0.3
carbon source
L-Phenylalanine (C)
N.D.
N.D.
+0.1
-0.2
-0.4
pH
Minimal media pH9
N.D.
N.D.
-0.1
-0.3
-0.2
stress
nitrite 10 mM
N.D.
N.D.
-0.2
-0.2
-0.2
stress
Chloride 500 mM
N.D.
N.D.
+0.1
-0.3
-0.3
stress
Doxycycline hyclate 0.0006 mg/ml
N.D.
N.D.
+0.1
-0.4
-0.1
carbon source
L-Isoleucine (C)
N.D.
N.D.
-0.2
+0.2
-0.2
stress
acetate 34 mM
N.D.
N.D.
+0.1
-0.4
+0.1
survival
4C survival; 672 hrs
N.D.
N.D.
+0.2
-0.1
-0.3
carbon source
L-Citrulline
N.D.
N.D.
+0.3
-0.5
+0.3
carbon source
acetate (C)
N.D.
N.D.
+0.3
-0.2
+0.3
carbon source
L-Citrulline
N.D.
N.D.
+0.2
+0.4
-0.2
stress
Benzalkonium Chloride 0.012 mg/ml
N.D.
N.D.
+0.2
+0.4
+0.1
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