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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_16530 and AO353_16535 are separated by 76 nucleotides
AO353_16535 and AO353_16540 are separated by 153 nucleotides
AO353_16540 and AO353_16545 are separated by 202 nucleotides
AO353_16545 and AO353_16550 are separated by 274 nucleotides
AO353_16530: AO353_16530 - ribonuclease HII, at 3,669,808 to 3,670,428
_16530
AO353_16535: AO353_16535 - DNA polymerase III subunit alpha, at 3,670,505 to 3,674,026
_16535
AO353_16540: AO353_16540 - acetyl-CoA carboxylase subunit alpha, at 3,674,180 to 3,675,127
_16540
AO353_16545: AO353_16545 - tRNA(Ile)-lysidine synthetase, at 3,675,330 to 3,676,643
_16545
AO353_16550: AO353_16550 - CTP synthase, at 3,676,918 to 3,678,549
_16550
Group
Condition
AO353
_16530
AO353
_16535
AO353
_16540
AO353
_16545
AO353
_16550
carbon source
casaminos (C)
-3.5
N.D.
N.D.
N.D.
N.D.
carbon source
L-Citrulline
-3.4
N.D.
N.D.
N.D.
N.D.
nitrogen source
Parabanic Acid (N)
-3.0
N.D.
N.D.
N.D.
N.D.
anaerobic
Anaerobic, acetate donor; nitrate and iron
-2.7
N.D.
N.D.
N.D.
N.D.
carbon source
acetate (C)
-2.4
N.D.
N.D.
N.D.
N.D.
stress
Benzalkonium Chloride 0.012 mg/ml
-2.2
N.D.
N.D.
N.D.
N.D.
stress
nitrite 10 mM
-2.2
N.D.
N.D.
N.D.
N.D.
carbon source
Tween 20 (C)
-2.1
N.D.
N.D.
N.D.
N.D.
stress
methylglyoxal 0.009 vol%
-2.1
N.D.
N.D.
N.D.
N.D.
carbon source
Ethanol (C)
-2.0
N.D.
N.D.
N.D.
N.D.
carbon source
m-Inositol (C)
-2.0
N.D.
N.D.
N.D.
N.D.
motility
outer cut, LB soft agar motility assay
-1.9
N.D.
N.D.
N.D.
N.D.
stress
Tetracycline 0.0016 mg/ml
-1.9
N.D.
N.D.
N.D.
N.D.
carbon source
L-Histidine (C)
-1.7
N.D.
N.D.
N.D.
N.D.
radiation
Ionizing radiation, 126.196 Gy,
-1.7
N.D.
N.D.
N.D.
N.D.
nitrogen source
Urea (N)
-1.5
N.D.
N.D.
N.D.
N.D.
stress
Vanillin 1.25 mM
-1.5
N.D.
N.D.
N.D.
N.D.
lb
LB
-1.5
N.D.
N.D.
N.D.
N.D.
stress
copper (II) chloride 2.5 mM
-1.5
N.D.
N.D.
N.D.
N.D.
stress
Furfuryl Alcohol 0.125 vol%
-1.4
N.D.
N.D.
N.D.
N.D.
stress
methylglyoxal 0.008 vol%
-1.4
N.D.
N.D.
N.D.
N.D.
carbon source
L-Aspartic Acid (C)
-1.3
N.D.
N.D.
N.D.
N.D.
carbon source
m-Inositol (C)
-1.3
N.D.
N.D.
N.D.
N.D.
stress
Sisomicin 0.008 mg/ml
-1.3
N.D.
N.D.
N.D.
N.D.
stress
Cobalt chloride 0.32 mM
-1.3
N.D.
N.D.
N.D.
N.D.
motility
outer cut, LB soft agar motility assay
-1.3
N.D.
N.D.
N.D.
N.D.
carbon source
L-Ornithine
+1.2
N.D.
N.D.
N.D.
N.D.
nitrogen source
L-Glutamic (N)
+1.3
N.D.
N.D.
N.D.
N.D.
carbon source
L-Phenylalanine (C)
+1.3
N.D.
N.D.
N.D.
N.D.
carbon source
L-Leucine (C)
+1.6
N.D.
N.D.
N.D.
N.D.
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