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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_16315 and AO353_16320 are separated by 93 nucleotides
AO353_16320 and AO353_16325 are separated by 281 nucleotides
AO353_16325 and AO353_16330 overlap by 1 nucleotides
AO353_16330 and AO353_16335 are separated by 32 nucleotides
AO353_16315: AO353_16315 - adenylate kinase, at 3,622,897 to 3,623,544
_16315
AO353_16320: AO353_16320 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaB, at 3,623,638 to 3,624,312
_16320
AO353_16325: AO353_16325 - hypothetical protein, at 3,624,594 to 3,624,902
_16325
AO353_16330: AO353_16330 - hypothetical protein, at 3,624,902 to 3,625,762
_16330
AO353_16335: AO353_16335 - 2-methylisocitrate lyase, at 3,625,795 to 3,626,616
_16335
Group
Condition
AO353
_16315
AO353
_16320
AO353
_16325
AO353
_16330
AO353
_16335
stress
Cisplatin 0.006 mg/ml
N.D.
N.D.
-0.4
-0.3
-0.6
stress
Sisomicin 0.008 mg/ml
N.D.
N.D.
-0.3
-0.5
-0.5
stress
Doxycycline hyclate 0.0006 mg/ml
N.D.
N.D.
-0.8
+0.1
-0.5
carbon source
L-Leucine (C)
N.D.
N.D.
-0.7
-0.1
-0.1
carbon source
L-Citrulline
N.D.
N.D.
-0.3
+0.1
-0.7
stress
A22 0.002 mg/ml
N.D.
N.D.
-0.4
-0.1
-0.2
carbon source
L-Citrulline
N.D.
N.D.
-0.6
-0.3
+0.1
carbon source
Cytidine (C)
N.D.
N.D.
-0.2
-0.2
-0.4
nitrogen source
nitrate (N)
N.D.
N.D.
-0.4
-0.1
-0.2
stress
sodium fluoride 6.25 mM
N.D.
N.D.
-0.2
+0.1
-0.5
stress
Cisplatin 0.006 mg/ml
N.D.
N.D.
-0.3
+0.2
-0.5
pH
Minimal media pH7
N.D.
N.D.
-0.2
+0.2
-0.4
carbon source
acetate (C)
N.D.
N.D.
-0.7
+0.5
-0.2
stress
Furfuryl Alcohol 0.0625 vol%
N.D.
N.D.
+0.2
-0.3
-0.4
stress
Thallium(I) acetate 0.016 mg/ml
N.D.
N.D.
-0.0
+0.2
-0.5
carbon source
Ethanol (C)
N.D.
N.D.
+0.3
-0.3
-0.2
carbon source
D-Glucose
N.D.
N.D.
-0.6
+0.0
+0.3
denitrifying
Nitrate reduction, replicate C
N.D.
N.D.
-0.5
+0.0
+0.4
carbon source
L-Ornithine
N.D.
N.D.
-0.3
+0.3
+0.2
carbon source
L-Ornithine
N.D.
N.D.
-0.4
+0.2
+0.4
pH
Minimal media pH9
N.D.
N.D.
+0.2
-0.3
+0.3
nitrogen source
Gly-Glu (N)
N.D.
N.D.
+0.3
+0.3
-0.3
carbon source
D-Glucose
N.D.
N.D.
-0.3
+0.2
+0.4
carbon source
L-Citrulline
N.D.
N.D.
-0.2
-0.0
+0.5
stress
Cobalt chloride 0.32 mM
N.D.
N.D.
+0.5
-0.1
+0.1
survival
4C survival; 192 hrs
N.D.
N.D.
+0.4
+0.3
-0.1
stress
Benzalkonium Chloride 0.012 mg/ml
N.D.
N.D.
+0.4
+0.0
+0.3
survival
4C survival; 360 hrs
N.D.
N.D.
+0.7
+0.5
-0.2
denitrifying
Nitrate reduction, replicate B
N.D.
N.D.
+0.3
+0.5
+0.2
survival
4C survival; 672 hrs
N.D.
N.D.
+1.0
+0.3
-0.0
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