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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_16205 and AO353_16210 are separated by 169 nucleotides
AO353_16210 and AO353_16215 are separated by 108 nucleotides
AO353_16215 and AO353_16220 are separated by 222 nucleotides
AO353_16220 and AO353_16225 are separated by 181 nucleotides
AO353_16205: AO353_16205 - GNAT family acetyltransferase, at 3,596,677 to 3,597,180
_16205
AO353_16210: AO353_16210 - XRE family transcriptional regulator, at 3,597,350 to 3,598,267
_16210
AO353_16215: AO353_16215 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase, at 3,598,376 to 3,600,688
_16215
AO353_16220: AO353_16220 - alpha/beta hydrolase, at 3,600,911 to 3,601,945
_16220
AO353_16225: AO353_16225 - Fis family transcriptional regulator, at 3,602,127 to 3,603,524
_16225
Group
Condition
AO353
_16205
AO353
_16210
AO353
_16215
AO353
_16220
AO353
_16225
nitrogen source
nitrite (N)
+0.2
-4.0
-0.1
-0.0
-0.1
nitrogen source
L-Glutamine (N)
+0.0
-3.0
+0.0
-0.2
+0.0
nitrogen source
L-Histidine (N)
-0.1
-2.0
+0.0
-0.6
-0.0
nitrogen source
L-Glutamine (N)
+0.1
-2.7
+0.1
+0.2
-0.3
nitrogen source
L-Arginine (N)
-0.0
-2.4
+0.1
+0.0
-0.0
carbon source
L-Histidine (C)
+0.1
-2.0
-0.1
-0.5
+0.2
nitrogen source
L-Glutamic (N)
+0.1
-2.0
+0.1
-0.1
-0.0
carbon source
L-Histidine (C)
+0.2
-2.0
-0.1
-0.2
+0.1
nitrogen source
L-Glutamic (N)
+0.1
-1.9
+0.1
+0.0
-0.1
nitrogen source
L-Arginine (N)
+0.0
-1.9
+0.0
+0.2
-0.1
carbon source
L-Glutamine (C)
-0.1
-1.8
+0.1
-0.1
+0.2
nitrogen source
L-Histidine (N)
+0.1
-2.1
-0.1
+0.2
+0.2
nitrogen source
L-Citrulline (N)
+0.1
-1.6
-0.0
-0.0
-0.0
stress
Lomefloxacin 0.001 mM
+0.1
-0.4
+0.0
-0.8
-0.4
carbon source
L-Lactate (C)
-0.0
-1.1
-0.1
-0.2
+0.1
carbon source
L-Malic (C)
+0.2
-1.3
+0.2
-0.6
+0.0
carbon source
Fumarate (C)
-0.0
-1.8
-0.0
+0.6
+0.0
carbon source
L-Glutamic (C)
+0.1
-1.4
+0.0
-0.1
+0.0
carbon source
L-Citrulline
-0.4
-0.3
-0.2
-0.7
+0.2
carbon source
L-Glutamine (C)
+0.1
-1.9
+0.1
+0.2
+0.2
carbon source
Tween 20 (C)
+0.3
-1.5
+0.0
-0.0
+0.1
carbon source
Tween 20 (C)
+0.2
-1.1
-0.1
-0.2
+0.2
carbon source
L-Malic (C)
+0.3
-1.3
+0.0
-0.1
+0.1
carbon source
L-Glutamic (C)
+0.1
-1.2
+0.1
-0.0
+0.2
carbon source
Fumarate (C)
+0.2
-1.4
+0.1
+0.2
+0.2
nitrogen source
D-Serine (N)
+0.2
-1.0
+0.1
+0.2
+0.2
carbon source
a-Ketoglutaric (C)
+0.2
-0.9
-0.0
+0.4
+0.2
carbon source
D-Glucose
-0.1
-0.6
+0.0
+0.7
+0.3
motility
outer cut, LB soft agar motility assay
+0.4
+0.3
+0.2
-0.6
+0.1
survival
4C survival; 672 hrs
+0.2
+0.9
+0.4
+0.4
+0.0
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