Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_15995 and AO353_16000 are separated by 2 nucleotidesAO353_16000 and AO353_16005 are separated by 260 nucleotidesAO353_16005 and AO353_16010 overlap by 1 nucleotidesAO353_16010 and AO353_16015 are separated by 175 nucleotides AO353_15995: AO353_15995 - trehalose-specific PTS system, I, HPr, and IIA components (from data), at 3,534,704 to 3,537,238 _15995 AO353_16000: AO353_16000 - PTS glucose transporter subunit IIB, at 3,537,241 to 3,537,531 _16000 AO353_16005: AO353_16005 - copper oxidase, at 3,537,792 to 3,539,168 _16005 AO353_16010: AO353_16010 - zinc-binding protein, at 3,539,168 to 3,539,665 _16010 AO353_16015: AO353_16015 - tRNA (mo5U34)-methyltransferase, at 3,539,841 to 3,540,797 _16015
Group Condition AO353_15995 AO353_16000 AO353_16005 AO353_16010 AO353_16015
carbon source D-Trehalose (C) -3.4 N.D. -0.1 N.D. -0.2
carbon source D-Trehalose (C) -3.4 N.D. -0.1 N.D. -0.2
anaerobic Anaerobic, acetate donor; nitrate and iron -0.9 N.D. -0.3 N.D. -0.3
carbon source Trisodium citrate (C) +0.2 N.D. -1.3 N.D. -0.3
carbon source Trisodium citrate (C) +0.0 N.D. -0.8 N.D. -0.3
nitrogen source L-Glutamic (N) +0.0 N.D. -0.8 N.D. -0.2
nitrogen source L-Glutamine (N) -0.1 N.D. -0.5 N.D. -0.3
stress copper (II) chloride 2.5 mM -0.4 N.D. -0.5 N.D. +0.1
stress Cobalt chloride 0.16 mM -0.3 N.D. -0.3 N.D. +0.3
carbon source L-Ornithine -0.3 N.D. +0.3 N.D. -0.4
denitrifying Nitrate reduction, replicate B +0.4 N.D. -0.5 N.D. -0.1
stress Nickel (II) chloride 0.625 mM -0.0 N.D. -0.5 N.D. +0.5
pH Minimal media pH9 +0.3 N.D. +0.2 N.D. -0.5
denitrifying Nitrate reduction, replicate C +0.5 N.D. -0.2 N.D. -0.3
carbon source D-Glucose +0.2 N.D. +0.7 N.D. -0.7
stress Sisomicin 0.008 mg/ml +0.2 N.D. +0.4 N.D. -0.4
stress Cobalt chloride 0.32 mM +0.1 N.D. -0.5 N.D. +0.6
carbon source L-Ornithine +0.1 N.D. +0.4 N.D. -0.3
carbon source L-Citrulline +0.2 N.D. +0.4 N.D. -0.3
carbon source acetate (C) -0.2 N.D. +0.5 N.D. +0.1
nitrogen source Parabanic Acid (N) +0.5 N.D. +0.2 N.D. -0.1
stress Doxycycline hyclate 0.0006 mg/ml +0.7 N.D. -0.0 N.D. +0.1
carbon source Uridine (C) +0.1 N.D. +0.2 N.D. +0.5
stress 1-ethyl-3-methylimidazolium acetate 30 mM +0.1 N.D. +0.4 N.D. +0.3
stress Lomefloxacin 0.001 mM +0.1 N.D. +0.3 N.D. +0.4
carbon source L-Citrulline +0.6 N.D. +0.2 N.D. +0.1
stress Tetracycline 0.0016 mg/ml +0.4 N.D. +0.3 N.D. +0.3
carbon source propionate (C) +0.1 N.D. +0.2 N.D. +0.7
stress Cisplatin 0.006 mg/ml +0.1 N.D. +0.5 N.D. +0.6
stress Cisplatin 0.006 mg/ml +0.6 N.D. +0.8 N.D. +0.3
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