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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_15985 and AO353_15990 are separated by 96 nucleotides
AO353_15990 and AO353_15995 are separated by 61 nucleotides
AO353_15995 and AO353_16000 are separated by 2 nucleotides
AO353_16000 and AO353_16005 are separated by 260 nucleotides
AO353_15985: AO353_15985 - Alpha,alpha-phosphotrehalase (EC 3.2.1.93)
(from data)
, at 3,531,673 to 3,533,322
_15985
AO353_15990: AO353_15990 - maltoporin, at 3,533,419 to 3,534,642
_15990
AO353_15995: AO353_15995 - trehalose-specific PTS system, I, HPr, and IIA components
(from data)
, at 3,534,704 to 3,537,238
_15995
AO353_16000: AO353_16000 - PTS glucose transporter subunit IIB, at 3,537,241 to 3,537,531
_16000
AO353_16005: AO353_16005 - copper oxidase, at 3,537,792 to 3,539,168
_16005
Group
Condition
AO353
_15985
AO353
_15990
AO353
_15995
AO353
_16000
AO353
_16005
carbon source
D-Trehalose (C)
-3.6
-3.2
-3.4
N.D.
-0.1
carbon source
D-Trehalose (C)
-3.4
-3.0
-3.4
N.D.
-0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.4
-0.1
-0.9
N.D.
-0.3
stress
copper (II) chloride 2.5 mM
-0.7
+0.0
-0.4
N.D.
-0.5
carbon source
Trisodium citrate (C)
-0.2
-0.1
+0.2
N.D.
-1.3
carbon source
Trisodium citrate (C)
-0.7
+0.1
+0.0
N.D.
-0.8
nitrogen source
L-Glutamic (N)
-0.2
-0.1
+0.0
N.D.
-0.8
stress
Paraquat dichloride 0.032 mg/mL
-1.0
-0.1
+0.1
N.D.
-0.1
denitrifying
Nitrate reduction, replicate B
-0.3
-0.3
+0.4
N.D.
-0.5
carbon source
propionate (C)
-0.8
+0.1
-0.0
N.D.
+0.1
carbon source
Ethanol (C)
-0.4
+0.2
+0.0
N.D.
-0.4
carbon source
propionate (C)
-0.9
+0.1
+0.1
N.D.
+0.2
carbon source
acetate (C)
-0.7
+0.1
-0.2
N.D.
+0.5
denitrifying
Nitrate reduction, replicate C
-0.1
-0.3
+0.5
N.D.
-0.2
pH
Minimal media pH9
-0.6
-0.0
+0.3
N.D.
+0.2
carbon source
acetate (C)
-0.6
-0.1
+0.1
N.D.
+0.5
stress
Tetracycline 0.0016 mg/ml
-0.4
-0.0
+0.4
N.D.
+0.3
motility
outer cut, LB soft agar motility assay
-0.2
+0.3
+0.4
N.D.
-0.2
stress
Cisplatin 0.006 mg/ml
-0.4
-0.0
+0.6
N.D.
+0.8
carbon source
L-Citrulline
+1.1
-0.2
-0.2
N.D.
+0.3
carbon source
L-Ornithine
+1.5
-0.4
-0.3
N.D.
+0.3
carbon source
L-Citrulline
+1.2
-0.1
-0.1
N.D.
+0.4
carbon source
L-Ornithine
+1.3
-0.3
+0.2
N.D.
+0.2
survival
4C survival; 672 hrs
+0.7
+0.3
+0.1
N.D.
+0.5
carbon source
L-Ornithine
+1.2
-0.0
+0.1
N.D.
+0.4
carbon source
D-Glucose
+1.1
-0.2
+0.2
N.D.
+0.7
carbon source
L-Ornithine
+1.4
-0.0
+0.0
N.D.
+0.3
carbon source
D-Glucose
+1.2
-0.1
+0.3
N.D.
+0.3
carbon source
L-Citrulline
+1.3
-0.1
+0.2
N.D.
+0.4
carbon source
L-Citrulline
+1.3
-0.2
+0.6
N.D.
+0.2
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