Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_15985 and AO353_15990 are separated by 96 nucleotidesAO353_15990 and AO353_15995 are separated by 61 nucleotidesAO353_15995 and AO353_16000 are separated by 2 nucleotidesAO353_16000 and AO353_16005 are separated by 260 nucleotides AO353_15985: AO353_15985 - Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data), at 3,531,673 to 3,533,322 _15985 AO353_15990: AO353_15990 - maltoporin, at 3,533,419 to 3,534,642 _15990 AO353_15995: AO353_15995 - trehalose-specific PTS system, I, HPr, and IIA components (from data), at 3,534,704 to 3,537,238 _15995 AO353_16000: AO353_16000 - PTS glucose transporter subunit IIB, at 3,537,241 to 3,537,531 _16000 AO353_16005: AO353_16005 - copper oxidase, at 3,537,792 to 3,539,168 _16005
Group Condition AO353_15985 AO353_15990 AO353_15995 AO353_16000 AO353_16005
carbon source D-Trehalose (C) -3.6 -3.2 -3.4 N.D. -0.1
carbon source D-Trehalose (C) -3.4 -3.0 -3.4 N.D. -0.1
anaerobic Anaerobic, acetate donor; nitrate and iron -0.4 -0.1 -0.9 N.D. -0.3
stress copper (II) chloride 2.5 mM -0.7 +0.0 -0.4 N.D. -0.5
carbon source Trisodium citrate (C) -0.2 -0.1 +0.2 N.D. -1.3
carbon source Trisodium citrate (C) -0.7 +0.1 +0.0 N.D. -0.8
nitrogen source L-Glutamic (N) -0.2 -0.1 +0.0 N.D. -0.8
stress Paraquat dichloride 0.032 mg/mL -1.0 -0.1 +0.1 N.D. -0.1
denitrifying Nitrate reduction, replicate B -0.3 -0.3 +0.4 N.D. -0.5
carbon source propionate (C) -0.8 +0.1 -0.0 N.D. +0.1
carbon source Ethanol (C) -0.4 +0.2 +0.0 N.D. -0.4
carbon source propionate (C) -0.9 +0.1 +0.1 N.D. +0.2
carbon source acetate (C) -0.7 +0.1 -0.2 N.D. +0.5
denitrifying Nitrate reduction, replicate C -0.1 -0.3 +0.5 N.D. -0.2
pH Minimal media pH9 -0.6 -0.0 +0.3 N.D. +0.2
carbon source acetate (C) -0.6 -0.1 +0.1 N.D. +0.5
stress Tetracycline 0.0016 mg/ml -0.4 -0.0 +0.4 N.D. +0.3
motility outer cut, LB soft agar motility assay -0.2 +0.3 +0.4 N.D. -0.2
stress Cisplatin 0.006 mg/ml -0.4 -0.0 +0.6 N.D. +0.8
carbon source L-Citrulline +1.1 -0.2 -0.2 N.D. +0.3
carbon source L-Ornithine +1.5 -0.4 -0.3 N.D. +0.3
carbon source L-Citrulline +1.2 -0.1 -0.1 N.D. +0.4
carbon source L-Ornithine +1.3 -0.3 +0.2 N.D. +0.2
survival 4C survival; 672 hrs +0.7 +0.3 +0.1 N.D. +0.5
carbon source L-Ornithine +1.2 -0.0 +0.1 N.D. +0.4
carbon source D-Glucose +1.1 -0.2 +0.2 N.D. +0.7
carbon source L-Ornithine +1.4 -0.0 +0.0 N.D. +0.3
carbon source D-Glucose +1.2 -0.1 +0.3 N.D. +0.3
carbon source L-Citrulline +1.3 -0.1 +0.2 N.D. +0.4
carbon source L-Citrulline +1.3 -0.2 +0.6 N.D. +0.2
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