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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_15680 and AO353_15685 are separated by 373 nucleotides
AO353_15685 and AO353_15690 overlap by 4 nucleotides
AO353_15690 and AO353_15695 overlap by 4 nucleotides
AO353_15695 and AO353_15700 overlap by 1 nucleotides
AO353_15680: AO353_15680 - cation-binding protein, at 3,467,939 to 3,468,397
_15680
AO353_15685: AO353_15685 - formate dehydrogenase, at 3,468,771 to 3,468,992
_15685
AO353_15690: AO353_15690 - formate dehydrogenase, at 3,468,989 to 3,471,877
_15690
AO353_15695: AO353_15695 - formate dehydrogenase, at 3,471,874 to 3,473,433
_15695
AO353_15700: AO353_15700 - formate dehydrogenase, at 3,473,433 to 3,473,909
_15700
Group
Condition
AO353
_15680
AO353
_15685
AO353
_15690
AO353
_15695
AO353
_15700
carbon source
L-Leucine (C)
-1.0
-0.4
-0.3
-0.2
+0.2
carbon source
L-Alanine (C)
-0.9
-0.4
-0.1
+0.4
-0.2
motility
outer cut, LB soft agar motility assay
-0.6
-1.0
+0.2
+0.3
-0.1
carbon source
Ethanol (C)
-1.1
+0.0
+0.0
-0.1
+0.1
motility
outer cut, LB soft agar motility assay
-0.3
-0.4
-0.5
-0.2
+0.6
carbon source
L-Histidine (C)
-0.6
+0.3
-0.2
+0.0
-0.2
nitrogen source
Uridine (N)
-0.6
-0.4
-0.0
+0.1
+0.3
carbon source
L-Arginine (C)
+0.4
-0.7
-0.1
-0.1
-0.1
stress
Sisomicin 0.008 mg/ml
-0.1
-0.7
+0.1
+0.0
+0.3
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.2
-0.6
-0.3
-0.1
+0.6
stress
Cisplatin 0.006 mg/ml
-0.7
-0.0
+0.2
+0.3
+0.1
carbon source
L-Arginine (C)
+0.2
+0.3
-0.2
-0.3
-0.2
carbon source
L-Citrulline
-0.6
+0.2
+0.0
-0.3
+0.5
carbon source
L-Tryptophan (C)
+0.7
-0.3
-0.3
-0.2
+0.1
stress
Furfuryl Alcohol 0.25 vol%
+0.8
-0.7
+0.0
+0.0
-0.1
pH
Minimal media pH6
-0.7
+0.3
+0.2
+0.2
+0.1
stress
Furfuryl Alcohol 0.0625 vol%
+0.6
-0.3
+0.1
+0.0
-0.2
carbon source
L-Ornithine
-0.7
+0.5
-0.1
+0.1
+0.3
carbon source
L-Valine (C)
+0.9
-0.6
-0.3
+0.1
+0.1
carbon source
L-Serine (C)
+0.5
-0.3
-0.1
-0.1
+0.4
stress
Lomefloxacin 0.001 mM
+0.4
+0.5
-0.8
+0.1
+0.3
stress
Benzalkonium Chloride 0.01 mg/ml
+0.9
-0.0
-0.1
+0.1
-0.2
carbon source
L-Proline (C)
-0.4
+0.5
+0.1
+0.2
+0.2
carbon source
acetate (C)
-0.2
+0.5
+0.4
-0.0
+0.3
carbon source
L-Citrulline
+0.7
+0.7
-0.1
+0.1
-0.1
carbon source
acetate (C)
+0.3
+0.2
+0.1
+0.1
+0.5
pH
Minimal media pH9
+0.4
+0.1
+0.1
+0.4
+0.3
pH
Minimal media pH9
+0.4
+0.5
+0.1
+0.2
+0.2
carbon source
L-Ornithine
-0.0
+0.6
+0.3
+0.2
+0.3
denitrifying
Nitrate reduction, replicate B
+0.7
+0.4
+0.2
-0.1
+0.5
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