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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_15620 and AO353_15625 are separated by 218 nucleotides
AO353_15625 and AO353_15630 are separated by 7 nucleotides
AO353_15630 and AO353_15635 are separated by 131 nucleotides
AO353_15635 and AO353_15640 are separated by 102 nucleotides
AO353_15620: AO353_15620 - cytochrome C biogenesis protein, at 3,455,776 to 3,457,587
_15620
AO353_15625: AO353_15625 - methionine sulfoxide reductase A, at 3,457,806 to 3,458,513
_15625
AO353_15630: AO353_15630 - diguanylate cyclase, at 3,458,521 to 3,459,534
_15630
AO353_15635: AO353_15635 - LysR family transcriptional regulator, at 3,459,666 to 3,460,574
_15635
AO353_15640: AO353_15640 - acetylornithine aminotransferase, at 3,460,677 to 3,461,852
_15640
Group
Condition
AO353
_15620
AO353
_15625
AO353
_15630
AO353
_15635
AO353
_15640
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.4
-0.5
+0.1
+0.0
-2.7
carbon source
L-Phenylalanine (C)
-0.0
+0.3
+0.2
-0.9
-2.0
stress
methylglyoxal 0.009 vol%
+0.1
-0.2
-0.3
-0.1
-1.1
stress
Fusidic 0.125 mg/ml
-0.4
-0.1
-0.1
-0.0
-0.8
temperature
LB 30C
-0.2
-0.1
+0.1
-0.0
-1.0
stress
perchlorate 75 mM
-0.1
-0.1
+0.1
-0.1
-0.9
stress
Sisomicin 0.008 mg/ml
+0.2
-0.2
-0.5
-0.1
-0.4
carbon source
D,L-Lactate (C)
+0.1
-0.2
-0.1
-0.1
-0.7
nitrogen source
Parabanic Acid (N)
-0.2
+0.3
-0.1
-0.0
-0.8
carbon source
L-Citrulline (C)
+0.2
+0.2
-0.2
-0.1
-0.8
motility
outer cut, LB soft agar motility assay
+0.2
-0.0
+0.6
-0.4
-1.0
nitrogen source
NAG (N)
+0.1
+0.2
-0.4
-0.0
-0.5
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-0.2
-0.1
-0.3
+0.4
-0.5
stress
Lomefloxacin 0.001 mM
-0.1
+0.3
-0.6
+0.3
-0.4
stress
Tetracycline 0.0016 mg/ml
-0.2
+0.0
-0.7
+0.2
+0.3
nitrogen source
Gly-Glu (N)
-0.1
+0.3
+0.3
-0.2
-0.5
carbon source
acetate (C)
+0.3
-0.1
-0.2
+0.4
-0.6
carbon source
L-Tryptophan (C)
-0.2
+0.4
+0.4
-0.3
-0.4
stress
Cisplatin 0.006 mg/ml
+0.1
-0.1
+0.7
-0.1
-0.6
carbon source
L-Citrulline
+0.1
-0.2
+0.8
+0.1
-0.8
motility
outer cut, LB soft agar motility assay
+0.2
-0.2
+0.4
-0.5
+0.5
carbon source
L-Citrulline
+0.1
+0.1
-0.2
-0.3
+0.7
carbon source
D-Glucose
-0.1
+0.2
-0.2
+0.1
+0.7
carbon source
L-Alanine (C)
+0.3
-0.3
+0.4
-0.0
+0.2
stress
Cisplatin 0.006 mg/ml
-0.3
+0.4
+0.5
+0.4
-0.1
carbon source
L-Ornithine
-0.3
+0.2
+0.4
+0.1
+0.4
carbon source
L-Citrulline
-0.1
-0.2
+0.7
+0.1
+0.4
stress
Doxycycline hyclate 0.0002 mg/ml
-0.1
+0.5
+0.3
+0.1
+0.4
stress
1-ethyl-3-methylimidazolium acetate 15 mM
+0.2
+0.2
-0.1
+0.4
+0.5
motility
outer cut, LB soft agar motility assay
+0.7
+0.3
+0.6
+0.0
-0.2
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