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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_15445 and AO353_15450 are separated by 815 nucleotides
AO353_15450 and AO353_15455 are separated by 3 nucleotides
AO353_15455 and AO353_15460 are separated by 3 nucleotides
AO353_15460 and AO353_15465 are separated by 0 nucleotides
AO353_15445: AO353_15445 - disulfide bond formation protein B, at 3,414,138 to 3,414,647
_15445
AO353_15450: AO353_15450 - ubiquinol oxidase subunit II, at 3,415,463 to 3,416,413
_15450
AO353_15455: AO353_15455 - cytochrome o ubiquinol oxidase subunit I, at 3,416,417 to 3,418,447
_15455
AO353_15460: AO353_15460 - cytochrome o ubiquinol oxidase subunit III, at 3,418,451 to 3,419,077
_15460
AO353_15465: AO353_15465 - cytochrome C oxidase, at 3,419,078 to 3,419,416
_15465
Group
Condition
AO353
_15445
AO353
_15450
AO353
_15455
AO353
_15460
AO353
_15465
stress
nitrite 10 mM
-0.2
-2.3
-2.6
-2.6
-3.1
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-0.7
-1.0
-2.2
-1.6
-2.3
stress
Cholin acetate 38 mM
-0.7
-1.1
-2.0
-1.7
-1.9
stress
acetate 68 mM
-0.4
-1.0
-2.2
-2.0
-1.8
stress
D-Cycloserine 0.1 mg/ml
+0.2
-0.8
-1.8
-2.2
-1.5
stress
sodium fluoride 6.25 mM
-0.7
-1.3
-1.0
-1.1
-1.2
stress
copper (II) chloride 2.5 mM
+0.5
-0.4
-1.9
-1.4
-1.4
stress
Cobalt chloride 0.16 mM
-0.9
-0.3
-0.8
-1.2
-1.4
stress
copper (II) chloride 2.5 mM
+0.5
-0.4
-1.6
-1.7
-1.4
stress
syringaldehyde 5 mM
-1.0
-0.5
-0.7
-0.7
-1.3
pH
Minimal media pH6
-2.9
-0.2
-0.3
-0.3
-0.4
stress
Cobalt chloride 0.16 mM
-0.2
-0.6
-1.3
-1.3
-0.6
pH
Minimal media pH6
-3.0
-0.1
-0.2
-0.4
-0.3
stress
Chloride 500 mM
-0.4
-0.7
-0.6
-0.8
-0.9
stress
benzoic 0.58 mg/ml
+0.2
-0.4
-0.9
-0.9
-1.0
motility
outer cut, LB soft agar motility assay
-1.6
-0.4
+0.4
+0.7
+0.6
stress
perchlorate 75 mM
-1.7
+0.9
+0.6
+0.7
+1.3
stress
nitrate 200 mM
-1.7
+1.0
+1.1
+1.4
+1.6
carbon source
L-Valine (C)
+0.1
+1.2
+0.9
+1.3
+0.8
stress
Spectinomycin 0.15 mg/ml
-0.1
+1.4
+1.3
+1.4
+1.2
pH
Minimal media pH9
+0.5
+1.1
+1.3
+1.3
+1.2
pH
Minimal media pH9
+0.6
+1.2
+1.2
+1.3
+0.9
stress
Thallium(I) acetate 0.008 mg/ml
+0.6
+1.8
+1.2
+1.0
+0.8
stress
Thallium(I) acetate 0.008 mg/ml
+0.5
+2.0
+1.2
+1.2
+0.7
stress
Cobalt chloride 0.32 mM
+0.2
+2.7
+1.4
+1.3
+1.5
stress
Gentamicin 0.006 mg/ml
+0.7
+1.9
+1.6
+1.5
+1.5
stress
Fusidic 0.125 mg/ml
+0.7
+1.9
+1.6
+1.6
+1.6
stress
Spectinomycin 0.2 mg/ml
+0.2
+2.1
+1.9
+1.7
+1.7
stress
Paraquat dichloride 0.032 mg/mL
+0.4
+3.1
+1.7
+1.5
+1.4
stress
Sisomicin 0.008 mg/ml
+2.8
+7.8
+7.1
+6.7
+7.0
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