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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_15430 and AO353_15435 are separated by 259 nucleotides
AO353_15435 and AO353_15440 are separated by 158 nucleotides
AO353_15440 and AO353_15445 are separated by 300 nucleotides
AO353_15445 and AO353_15450 are separated by 815 nucleotides
AO353_15430: AO353_15430 - chemotaxis protein CheW, at 3,409,773 to 3,410,681
_15430
AO353_15435: AO353_15435 - transcriptional regulator, at 3,410,941 to 3,412,497
_15435
AO353_15440: AO353_15440 - dihydropteridine reductase, at 3,412,656 to 3,413,837
_15440
AO353_15445: AO353_15445 - disulfide bond formation protein B, at 3,414,138 to 3,414,647
_15445
AO353_15450: AO353_15450 - ubiquinol oxidase subunit II, at 3,415,463 to 3,416,413
_15450
Group
Condition
AO353
_15430
AO353
_15435
AO353
_15440
AO353
_15445
AO353
_15450
pH
Minimal media pH6
+0.1
-0.2
-0.0
-2.9
-0.2
stress
nitrite 10 mM
-0.2
-0.1
-0.4
-0.2
-2.3
pH
Minimal media pH6
+0.1
+0.0
+0.1
-3.0
-0.1
motility
outer cut, LB soft agar motility assay
-1.6
+0.2
+0.6
-1.6
-0.4
stress
sodium fluoride 6.25 mM
-0.1
-0.2
-0.3
-0.7
-1.3
survival
4C survival; 360 hrs
+0.0
-0.1
+0.2
-2.4
+0.1
stress
Cholin acetate 38 mM
-0.1
-0.1
+0.1
-0.7
-1.1
carbon source
L-Aspartic Acid (C)
+0.1
-0.1
-0.2
-1.3
-0.2
stress
Nickel (II) chloride 0.625 mM
+0.2
-0.0
-0.1
-1.3
-0.4
carbon source
D-Glucose (C)
+0.2
+0.1
-0.1
-1.5
-0.3
motility
outer cut, LB soft agar motility assay
-1.1
-0.5
-0.1
+0.4
-0.1
nitrogen source
Thymine (N)
+0.1
+0.1
-0.2
-1.3
+0.1
stress
perchlorate 75 mM
-0.2
+0.1
-0.1
-1.7
+0.9
stress
nitrate 200 mM
-0.2
+0.2
-0.3
-1.7
+1.0
nitrogen source
Parabanic Acid (N)
+0.3
-0.1
-0.2
-0.9
+0.4
carbon source
L-Citrulline
+0.2
-0.7
+0.1
-0.4
+1.0
carbon source
L-Tryptophan (C)
+0.0
+0.4
+0.1
-0.6
+0.9
carbon source
L-Citrulline
-0.2
-0.4
+0.4
+0.6
+1.0
pH
Minimal media pH9
+0.2
-0.3
+0.2
+0.5
+1.1
stress
Thallium(I) acetate 0.016 mg/ml
-0.1
-0.2
+0.3
+1.0
+0.9
pH
Minimal media pH9
+0.2
+0.1
-0.1
+0.6
+1.2
stress
Spectinomycin 0.2 mg/ml
-0.2
-0.0
+0.3
+0.2
+2.1
stress
Thallium(I) acetate 0.008 mg/ml
-0.0
-0.2
+0.4
+0.6
+1.8
stress
Thallium(I) acetate 0.008 mg/ml
+0.0
+0.1
+0.1
+0.5
+2.0
stress
Cobalt chloride 0.32 mM
+0.2
+0.1
+0.1
+0.3
+2.1
stress
Fusidic 0.125 mg/ml
-0.2
+0.4
+0.1
+0.7
+1.9
stress
Cobalt chloride 0.32 mM
+0.1
+0.1
+0.2
+0.2
+2.7
stress
Gentamicin 0.006 mg/ml
+0.2
+0.1
+0.7
+0.7
+1.9
stress
Paraquat dichloride 0.032 mg/mL
-0.2
+0.3
+0.4
+0.4
+3.1
stress
Sisomicin 0.008 mg/ml
+0.1
+0.3
+1.4
+2.8
+7.8
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