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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_15420 and AO353_15425 are separated by 91 nucleotides
AO353_15425 and AO353_15430 are separated by 3 nucleotides
AO353_15430 and AO353_15435 are separated by 259 nucleotides
AO353_15435 and AO353_15440 are separated by 158 nucleotides
AO353_15420: AO353_15420 - hypothetical protein, at 3,408,884 to 3,409,195
_15420
AO353_15425: AO353_15425 - GNAT family acetyltransferase, at 3,409,287 to 3,409,769
_15425
AO353_15430: AO353_15430 - chemotaxis protein CheW, at 3,409,773 to 3,410,681
_15430
AO353_15435: AO353_15435 - transcriptional regulator, at 3,410,941 to 3,412,497
_15435
AO353_15440: AO353_15440 - dihydropteridine reductase, at 3,412,656 to 3,413,837
_15440
Group
Condition
AO353
_15420
AO353
_15425
AO353
_15430
AO353
_15435
AO353
_15440
motility
outer cut, LB soft agar motility assay
+0.0
-0.2
-1.1
-0.5
-0.1
carbon source
L-Citrulline
-0.7
-0.6
-0.1
-0.3
+0.2
stress
Lomefloxacin 0.001 mM
-0.2
+0.2
-0.2
-0.5
-0.2
motility
outer cut, LB soft agar motility assay
+0.0
-0.2
-1.6
+0.2
+0.6
stress
Polymyxin B sulfate 4 mg/ml
-0.2
-0.0
-0.3
-0.3
+0.2
stress
Benzalkonium Chloride 0.01 mg/ml
-0.5
-0.4
+0.1
+0.2
-0.0
stress
1-ethyl-3-methylimidazolium chloride 170 mM
-0.2
-0.4
+0.1
+0.2
-0.2
nitrogen source
L-Phenylalanine (N)
+0.2
-0.4
-0.2
-0.0
-0.1
stress
Nalidixic 0.004 mg/ml
-0.4
-0.2
-0.1
-0.1
+0.3
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-0.5
-0.4
+0.1
+0.3
+0.1
stress
Thallium(I) acetate 0.016 mg/ml
-0.2
-0.2
-0.1
-0.2
+0.3
carbon source
L-Citrulline
+0.0
+0.0
+0.2
-0.7
+0.1
motility
outer cut, LB soft agar motility assay
+0.4
-0.3
-0.6
+0.1
+0.2
carbon source
L-Ornithine
-0.5
+0.4
-0.0
+0.1
-0.0
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.0
-0.9
+0.2
+0.3
+0.4
nitrogen source
Parabanic Acid (N)
-0.2
+0.2
+0.3
-0.1
-0.2
stress
acetate 34 mM
-0.2
-0.3
+0.1
+0.1
+0.3
stress
nitrate 200 mM
+0.1
+0.3
-0.2
+0.2
-0.3
stress
methylglyoxal 0.009 vol%
+0.4
-0.1
-0.0
-0.4
+0.2
carbon source
L-Citrulline
+0.1
+0.5
-0.2
-0.4
+0.4
stress
Thallium(I) acetate 0.008 mg/ml
-0.1
+0.3
-0.0
-0.2
+0.4
stress
Cobalt chloride 0.32 mM
-0.3
+0.5
+0.1
+0.1
+0.2
carbon source
D-Glucose
+0.5
-0.1
+0.2
-0.2
+0.3
carbon source
L-Alanine (C)
-0.3
+0.2
-0.1
+0.2
+0.5
stress
Paraquat dichloride 0.032 mg/mL
+0.2
+0.1
-0.2
+0.3
+0.4
carbon source
L-Ornithine
-0.1
+0.2
+0.3
+0.1
+0.2
stress
Gentamicin 0.006 mg/ml
+0.1
-0.2
+0.2
+0.1
+0.7
carbon source
L-Ornithine
-0.0
+0.4
-0.1
+0.3
+0.3
stress
Cisplatin 0.006 mg/ml
+0.7
+0.2
-0.1
+0.2
+0.1
stress
Sisomicin 0.008 mg/ml
+0.2
+0.1
+0.1
+0.3
+1.4
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