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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_15390 and AO353_15395 are separated by 255 nucleotides
AO353_15395 and AO353_15400 are separated by 8 nucleotides
AO353_15400 and AO353_15405 overlap by 4 nucleotides
AO353_15405 and AO353_15410 are separated by 211 nucleotides
AO353_15390: AO353_15390 - histidine kinase, at 3,401,000 to 3,402,370
_15390
AO353_15395: AO353_15395 - transcriptional regulator, at 3,402,626 to 3,403,300
_15395
AO353_15400: AO353_15400 - acriflavine resistance protein B, at 3,403,309 to 3,406,404
_15400
AO353_15405: AO353_15405 - RND transporter MFP subunit, at 3,406,401 to 3,407,570
_15405
AO353_15410: AO353_15410 - hypothetical protein, at 3,407,782 to 3,408,027
_15410
Group
Condition
AO353
_15390
AO353
_15395
AO353
_15400
AO353
_15405
AO353
_15410
carbon source
L-Isoleucine (C)
+0.1
-0.8
-0.2
-0.0
-4.0
stress
Spectinomycin 0.2 mg/ml
+0.2
+0.4
+0.0
-0.0
-3.6
nitrogen source
Parabanic Acid (N)
+0.1
-0.4
+0.1
-0.6
-1.6
stress
Chloramphenicol 0.0025 mg/ml
-0.1
-0.4
+0.0
+0.1
-1.9
nitrogen source
L-Glutamine (N)
-0.3
-0.7
+0.1
+0.1
-1.1
carbon source
L-Aspartic Acid (C)
+0.0
+0.0
+0.1
-0.4
-1.7
carbon source
L-Valine (C)
-0.1
+0.1
+0.0
-0.1
-1.7
stress
Cisplatin 0.006 mg/ml
+0.5
-0.2
+0.4
-0.9
-1.6
nitrogen source
L-Serine (N)
-0.1
-0.2
+0.1
+0.1
-1.6
stress
acetate 17 mM
+0.1
-0.2
-0.0
+0.3
-1.7
stress
Choline chloride 358 mM
+0.1
-0.6
+0.1
+0.1
-1.2
carbon source
m-Inositol (C)
+0.2
-0.1
-0.1
-0.0
-1.4
carbon source
Glycerol (C)
+0.3
-0.1
+0.1
-0.0
-1.6
nitrogen source
Inosine (N)
-0.2
+0.1
+0.0
+0.3
-1.5
motility
outer cut, LB soft agar motility assay
+0.0
-0.2
+0.2
+0.6
-1.8
carbon source
L-Citrulline
-0.0
+0.3
-0.1
+0.2
-1.4
stress
Paraquat dichloride 0.032 mg/mL
+0.3
-0.1
-0.1
+0.2
-1.3
stress
Cholin acetate 19 mM
+0.2
-0.0
-0.1
+0.3
-1.4
carbon source
L-Citrulline
-0.0
+1.5
-0.2
+0.2
-2.3
carbon source
D-Glucose
+0.1
+1.0
-0.2
-0.2
-1.1
pH
Minimal media pH9
-0.2
-0.8
+0.1
-0.2
+0.7
stress
Benzalkonium Chloride 0.012 mg/ml
+0.3
+0.4
+0.1
+0.1
-1.2
carbon source
acetate (C)
-0.6
-0.5
+0.0
+0.2
+0.7
pH
Minimal media pH7
+0.1
-1.0
+0.1
+0.1
+1.3
pH
Minimal media pH6
-0.0
-0.5
+0.2
-0.2
+1.1
stress
Doxycycline hyclate 0.0006 mg/ml
-0.1
-0.1
-0.3
-0.2
+1.3
lb
LB
+0.1
-0.5
+0.2
-0.2
+1.4
denitrifying
Nitrate reduction, replicate B
+0.1
+0.5
+0.0
-0.2
+1.2
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.3
+0.3
-0.1
+0.3
+1.3
motility
outer cut, LB soft agar motility assay
+0.3
+0.7
+0.3
+0.6
+0.4
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