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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_15050 and AO353_15055 overlap by 13 nucleotides
AO353_15055 and AO353_15060 are separated by 484 nucleotides
AO353_15060 and AO353_15065 overlap by 16 nucleotides
AO353_15065 and AO353_15070 are separated by 129 nucleotides
AO353_15050: AO353_15050 - nitrate transport permease nrtB, at 3,331,177 to 3,331,980
_15050
AO353_15055: AO353_15055 - sulfonate ABC transporter ATP-binding protein, at 3,331,968 to 3,332,804
_15055
AO353_15060: AO353_15060 - histidine kinase, at 3,333,289 to 3,334,608
_15060
AO353_15065: AO353_15065 - XRE family transcriptional regulator, at 3,334,593 to 3,335,276
_15065
AO353_15070: AO353_15070 - hypothetical protein, at 3,335,406 to 3,335,666
_15070
Group
Condition
AO353
_15050
AO353
_15055
AO353
_15060
AO353
_15065
AO353
_15070
stress
Polymyxin B sulfate 4 mg/ml
-0.2
+0.1
-2.8
-3.2
-2.6
stress
Benzethonium chloride 0.025 mM
+0.1
-0.1
-0.6
-0.3
-0.6
carbon source
L-Isoleucine (C)
-1.2
-0.0
-0.2
+0.1
-0.1
carbon source
L-Ornithine
-0.8
+0.2
-0.3
-0.6
+0.1
nitrogen source
Putrescine (N)
-0.5
-0.0
-0.0
-0.6
-0.1
stress
Lomefloxacin 0.001 mM
+0.4
-0.3
-0.4
+0.1
-1.0
stress
Tetracycline 0.0016 mg/ml
-0.3
+0.2
-0.0
-0.7
-0.2
nitrogen source
L-Arginine (N)
-1.2
-0.2
+0.1
+0.1
+0.1
stress
Tetracycline 0.0008 mg/ml
-1.0
+0.0
-0.0
+0.2
-0.1
stress
Fusidic 0.125 mg/ml
-0.7
-0.2
+0.3
-0.2
+0.1
stress
Cisplatin 0.006 mg/ml
-0.7
-0.2
-0.1
+0.7
-0.2
stress
syringaldehyde 5 mM
+0.4
-0.1
+0.1
-0.6
-0.1
stress
Sisomicin 0.008 mg/ml
+0.6
+0.0
-0.3
-0.3
-0.2
stress
1-ethyl-3-methylimidazolium chloride 170 mM
-0.7
+0.1
+0.1
+0.4
-0.1
stress
Thallium(I) acetate 0.016 mg/ml
-0.8
+0.2
+0.1
+0.4
-0.1
stress
Choline chloride 268.5 mM
-0.7
+0.0
-0.0
+0.3
+0.2
carbon source
L-Leucine (C)
+0.2
-0.5
+0.1
+0.5
+0.1
carbon source
L-Malic (C)
-0.4
+0.2
+0.1
+0.5
+0.1
carbon source
L-Ornithine
+0.7
-0.2
-0.2
+0.3
-0.1
stress
acetate 17 mM
-0.4
+0.2
+0.1
+0.4
+0.3
lb
LB
+0.8
-0.1
+0.1
-0.2
+0.2
motility
outer cut, LB soft agar motility assay
+0.5
+0.1
-0.2
+0.5
-0.1
stress
Paraquat dichloride 0.032 mg/mL
+0.7
+0.2
+0.1
-0.2
+0.2
stress
Spectinomycin 0.15 mg/ml
+0.8
+0.1
-0.1
+0.2
+0.1
stress
Cholin acetate 19 mM
-0.2
+0.2
+0.2
+0.5
+0.4
stress
Doxycycline hyclate 0.0006 mg/ml
+0.6
+0.0
-0.1
+0.8
-0.2
motility
outer cut, LB soft agar motility assay
+0.7
-0.0
-0.1
+0.4
+0.2
stress
acetate 34 mM
-0.1
+0.4
+0.2
+0.7
-0.0
carbon source
acetate (C)
+0.5
+0.3
+0.4
-0.3
+0.5
stress
Dimethyl Sulfoxide 7.5 vol%
+0.6
+0.2
+0.3
+0.2
+0.2
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