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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_15030 and AO353_15035 are separated by 245 nucleotides
AO353_15035 and AO353_15040 are separated by 22 nucleotides
AO353_15040 and AO353_15045 are separated by 397 nucleotides
AO353_15045 and AO353_15050 are separated by 9 nucleotides
AO353_15030: AO353_15030 - LysR family transcriptional regulator, at 3,325,740 to 3,326,654
_15030
AO353_15035: AO353_15035 - aldehyde dehydrogenase, at 3,326,900 to 3,328,390
_15035
AO353_15040: AO353_15040 - aminotransferase, at 3,328,413 to 3,329,783
_15040
AO353_15045: AO353_15045 - taurine ABC transporter substrate-binding protein, at 3,330,181 to 3,331,167
_15045
AO353_15050: AO353_15050 - nitrate transport permease nrtB, at 3,331,177 to 3,331,980
_15050
Group
Condition
AO353
_15030
AO353
_15035
AO353
_15040
AO353
_15045
AO353
_15050
carbon source
L-Ornithine
-0.2
-0.7
+0.2
-0.1
-0.8
carbon source
L-Citrulline
-0.3
-0.6
+0.1
-0.2
-0.5
carbon source
L-Isoleucine (C)
+0.1
-0.3
+0.0
+0.0
-1.2
stress
Cobalt chloride 0.32 mM
-0.4
-0.5
+0.0
-0.1
-0.4
carbon source
L-Ornithine
-0.4
-0.6
+0.2
-0.4
-0.1
nitrogen source
L-Arginine (N)
+0.1
+0.3
-0.1
-0.1
-1.2
lb
LB
-0.2
+0.3
-0.3
+0.0
-0.6
pH
Minimal media pH9
-0.5
-0.2
+0.1
-0.3
+0.1
stress
Thallium(I) acetate 0.008 mg/ml
-0.5
+0.4
-0.2
+0.1
-0.6
motility
outer cut, LB soft agar motility assay
-0.1
-0.9
+0.3
+0.0
+0.0
stress
Thallium(I) acetate 0.016 mg/ml
-0.1
+0.4
-0.2
+0.0
-0.8
stress
Tetracycline 0.0008 mg/ml
-0.1
+0.2
+0.2
+0.1
-1.0
stress
1-ethyl-3-methylimidazolium chloride 170 mM
+0.5
-0.2
+0.0
+0.0
-0.7
stress
Cisplatin 0.006 mg/ml
+0.1
+0.5
-0.1
-0.2
-0.7
stress
Cobalt chloride 0.16 mM
-0.4
-0.3
-0.0
+0.0
+0.5
carbon source
L-Citrulline
+0.3
-1.0
+0.4
+0.3
-0.1
carbon source
L-Citrulline
-0.6
-0.3
+0.4
-0.3
+0.6
stress
Choline chloride 268.5 mM
+0.3
+0.2
+0.1
-0.0
-0.7
carbon source
acetate (C)
-0.3
-0.2
-0.2
+0.1
+0.5
carbon source
L-Aspartic Acid (C)
+0.1
+0.3
-0.2
+0.2
-0.5
carbon source
L-Valine (C)
+0.4
+0.2
+0.2
+0.1
-0.8
stress
Sisomicin 0.008 mg/ml
-0.3
+0.2
+0.2
-0.4
+0.6
carbon source
L-Citrulline
+0.2
+0.1
+0.3
+0.4
-0.6
carbon source
L-Ornithine
-0.3
-0.3
+0.0
+0.2
+0.7
stress
A22 0.01 mg/ml
-0.4
+0.1
+0.0
+0.1
+0.6
stress
Paraquat dichloride 0.032 mg/mL
+0.2
-0.1
-0.2
-0.1
+0.7
stress
Spectinomycin 0.15 mg/ml
-0.1
-0.1
+0.2
+0.1
+0.8
carbon source
D-Glucose
-0.1
+0.2
+0.2
-0.0
+0.9
carbon source
Ethanol (C)
+0.5
+0.3
+0.4
-0.0
+0.2
stress
Doxycycline hyclate 0.0006 mg/ml
+0.3
+0.8
-0.0
-0.0
+0.6
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