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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_14915 and AO353_14920 overlap by 4 nucleotides
AO353_14920 and AO353_14925 overlap by 4 nucleotides
AO353_14925 and AO353_14930 are separated by 106 nucleotides
AO353_14930 and AO353_14935 are separated by 178 nucleotides
AO353_14915: AO353_14915 - (2Fe-2S)-binding protein, at 3,299,415 to 3,299,651
_14915
AO353_14920: AO353_14920 - D-amino acid oxidase, at 3,299,648 to 3,300,763
_14920
AO353_14925: AO353_14925 - hydroxyproline-2-epimerase, at 3,300,760 to 3,301,695
_14925
AO353_14930: AO353_14930 - GntR family transcriptional regulator, at 3,301,802 to 3,302,482
_14930
AO353_14935: AO353_14935 - aminopeptidase, at 3,302,661 to 3,302,948
_14935
Group
Condition
AO353
_14915
AO353
_14920
AO353
_14925
AO353
_14930
AO353
_14935
nitrogen source
L-Histidine (N)
-0.4
-0.1
-0.4
-1.2
-1.3
pH
Minimal media pH9
-2.0
-0.4
+0.2
-1.4
+0.4
carbon source
D-Lactate (C)
-0.7
-0.1
-0.1
-1.5
-0.6
nitrogen source
Gly-Glu (N)
-0.3
-0.2
+0.1
-1.4
-0.9
carbon source
Putrescine (C)
-0.5
-0.2
+0.2
-1.3
-0.8
carbon source
L-Valine (C)
+0.3
+0.4
+0.2
-1.4
-2.1
carbon source
L-Citrulline (C)
+0.6
-0.2
-0.1
-1.1
-1.7
carbon source
D-Alanine (C)
-0.7
+0.2
-0.3
-0.4
-1.2
carbon source
Carnitine Hydrochloride (C)
+0.2
-0.1
-0.5
-0.7
-1.0
nitrogen source
Adenine (N)
-0.5
+0.3
+0.2
-1.0
-0.8
carbon source
L-Aspartic Acid (C)
+0.5
+0.1
+0.3
-1.8
-0.7
carbon source
D-Ribose (C)
+0.2
+0.0
-0.0
-2.1
+0.3
nitrogen source
Gly-DL-Asp (N)
-0.2
-0.1
+0.5
-1.2
-0.5
carbon source
m-Inositol (C)
+0.5
+0.3
+0.3
-1.7
-1.0
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.3
-0.9
+0.2
-0.1
-1.2
carbon source
L-Malic (C)
+0.8
+0.0
-0.2
-0.9
-0.9
carbon source
D-Trehalose (C)
+1.0
-0.2
-0.1
-0.6
-1.2
carbon source
L-Histidine (C)
+0.6
+0.1
+0.1
-0.5
-1.4
carbon source
L-Aspartic Acid (C)
+0.4
-0.3
-0.4
-1.4
+0.6
carbon source
Tween 20 (C)
+0.7
-0.1
-0.1
-0.4
-1.1
stress
Cobalt chloride 0.32 mM
-0.6
-0.3
-0.3
-0.6
+0.8
stress
Cisplatin 0.006 mg/ml
-1.3
+0.9
+0.1
+1.2
-1.9
carbon source
succinate (C)
+0.7
-0.1
-0.3
+0.1
-1.3
nitrogen source
L-Serine (N)
+0.7
-0.2
+0.1
-1.1
-0.4
stress
Cholin acetate 38 mM
+0.9
-0.3
-0.4
-0.8
-0.2
carbon source
L-Citrulline
+1.3
+0.2
-0.6
-1.1
-0.2
carbon source
Ethanol (C)
+0.9
-0.3
+0.2
-1.1
-0.1
nitrogen source
L-Lysine (N)
+0.6
-0.1
+0.6
-0.7
-0.7
carbon source
L-Ornithine
+0.9
-0.2
-0.9
+0.0
+0.5
stress
Doxycycline hyclate 0.0006 mg/ml
-1.2
-0.1
+0.4
+1.1
+0.3
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