Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_14910 and AO353_14915 overlap by 4 nucleotidesAO353_14915 and AO353_14920 overlap by 4 nucleotidesAO353_14920 and AO353_14925 overlap by 4 nucleotidesAO353_14925 and AO353_14930 are separated by 106 nucleotides AO353_14910: AO353_14910 - pyridine nucleotide-disulfide oxidoreductase, at 3,298,150 to 3,299,418 _14910 AO353_14915: AO353_14915 - (2Fe-2S)-binding protein, at 3,299,415 to 3,299,651 _14915 AO353_14920: AO353_14920 - D-amino acid oxidase, at 3,299,648 to 3,300,763 _14920 AO353_14925: AO353_14925 - hydroxyproline-2-epimerase, at 3,300,760 to 3,301,695 _14925 AO353_14930: AO353_14930 - GntR family transcriptional regulator, at 3,301,802 to 3,302,482 _14930
Group Condition AO353_14910 AO353_14915 AO353_14920 AO353_14925 AO353_14930
pH Minimal media pH9 -0.3 -2.0 -0.4 +0.2 -1.4
carbon source D-Lactate (C) -0.1 -0.7 -0.1 -0.1 -1.5
nitrogen source L-Histidine (N) -0.4 -0.4 -0.1 -0.4 -1.2
carbon source Uridine (C) +0.2 -0.9 -0.1 -0.1 -1.1
nitrogen source Gly-Glu (N) -0.1 -0.3 -0.2 +0.1 -1.4
carbon source D-Ribose (C) +0.0 +0.2 +0.0 -0.0 -2.1
carbon source Putrescine (C) +0.2 -0.5 -0.2 +0.2 -1.3
carbon source D-Serine (C) -0.1 -0.0 -0.5 +0.3 -1.2
anaerobic N1B4wt with N2E3m denitrifying replicate C -0.3 +0.4 -0.2 +0.0 -1.2
motility outer cut, LB soft agar motility assay -0.3 -0.1 +0.2 +0.2 -1.3
carbon source Ethanol (C) -0.8 +0.7 -0.0 -0.1 -1.2
carbon source L-Aspartic Acid (C) +0.3 +0.4 -0.3 -0.4 -1.4
carbon source L-Citrulline (C) -0.3 +0.6 -0.2 -0.1 -1.1
carbon source L-Aspartic Acid (C) -0.0 +0.5 +0.1 +0.3 -1.8
carbon source D-Lactate (C) +0.3 +0.3 -0.1 -0.5 -0.8
carbon source m-Inositol (C) -0.2 +0.5 +0.3 +0.3 -1.7
nitrogen source Adenine (N) +0.3 -0.5 +0.3 +0.2 -1.0
carbon source L-Malic (C) -0.4 +0.8 +0.0 -0.2 -0.9
carbon source L-Valine (C) -0.1 +0.3 +0.4 +0.2 -1.4
stress Cholin acetate 38 mM +0.0 +0.9 -0.3 -0.4 -0.8
nitrogen source L-Serine (N) -0.1 +0.7 -0.2 +0.1 -1.1
carbon source L-Ornithine -0.4 +0.9 -0.2 -0.9 +0.0
carbon source Ethanol (C) -0.2 +0.9 -0.3 +0.2 -1.1
carbon source pyruvate (C) +0.2 +0.5 +0.1 -0.3 -0.9
stress Sisomicin 0.008 mg/ml -0.2 -0.3 -0.7 +0.4 +0.4
carbon source L-Citrulline -0.2 +1.3 +0.2 -0.6 -1.1
nitrogen source L-Lysine (N) +0.3 +0.6 -0.1 +0.6 -0.7
stress Doxycycline hyclate 0.0006 mg/ml +0.6 -1.2 -0.1 +0.4 +1.1
stress Cisplatin 0.006 mg/ml -0.1 -1.3 +0.9 +0.1 +1.2
carbon source D-Glucose +0.2 +0.7 -0.4 +0.3 +0.5
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