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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_14870 and AO353_14875 are separated by 56 nucleotides
AO353_14875 and AO353_14880 are separated by 96 nucleotides
AO353_14880 and AO353_14885 are separated by 27 nucleotides
AO353_14885 and AO353_14890 overlap by 8 nucleotides
AO353_14870: AO353_14870 - ketoglutarate semialdehyde dehydrogenase, at 3,290,287 to 3,291,876
_14870
AO353_14875: AO353_14875 - 4-hydroxy-tetrahydrodipicolinate synthase, at 3,291,933 to 3,292,850
_14875
AO353_14880: AO353_14880 - hypothetical protein, at 3,292,947 to 3,293,984
_14880
AO353_14885: AO353_14885 - glutamine ABC transporter ATP-binding protein, at 3,294,012 to 3,294,734
_14885
AO353_14890: AO353_14890 - amino acid ABC transporter, at 3,294,727 to 3,295,377
_14890
Group
Condition
AO353
_14870
AO353
_14875
AO353
_14880
AO353
_14885
AO353
_14890
stress
Cisplatin 0.006 mg/ml
+0.1
-0.2
-0.2
-2.0
-0.5
stress
Doxycycline hyclate 0.0006 mg/ml
-0.2
-0.7
-0.3
+0.0
-0.6
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.1
-0.2
-0.3
-0.2
-0.4
carbon source
L-Valine (C)
-0.5
-0.1
-0.0
-0.4
+0.0
carbon source
acetate (C)
-0.6
-0.3
-0.1
-0.1
+0.1
radiation
Ionizing radiation, 126.196 Gy,
-0.1
-0.4
-0.1
-0.5
+0.2
carbon source
pyruvate (C)
-0.2
+0.1
-0.2
-0.5
+0.0
motility
outer cut, LB soft agar motility assay
-0.8
-0.1
-0.6
+0.3
+0.6
carbon source
L-Serine (C)
+0.1
-0.3
-0.4
+0.2
-0.2
stress
Cisplatin 0.006 mg/ml
+0.4
-0.6
+0.5
-0.6
-0.3
nitrogen source
Parabanic Acid (N)
-0.8
+0.2
+0.1
+0.1
-0.2
carbon source
Ethanol (C)
+0.1
+0.1
-0.6
-0.3
+0.2
stress
Tetracycline 0.0016 mg/ml
-0.4
+0.2
+0.1
+0.1
-0.4
nitrogen source
Glycine (N)
-0.4
+0.1
+0.2
+0.2
-0.5
carbon source
L-Citrulline (C)
+0.2
-0.1
+0.2
-0.4
-0.1
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
+0.4
-0.1
-0.5
-0.1
stress
Furfuryl Alcohol 0.25 vol%
-0.3
-0.2
-0.1
+0.3
+0.1
pH
Minimal media pH9
+0.1
+0.2
-0.3
+0.2
-0.3
carbon source
acetate (C)
-0.1
-0.4
+0.3
-0.2
+0.3
stress
Cholin acetate 10 mM
-0.3
-0.2
+0.1
-0.0
+0.4
carbon source
Uridine (C)
+0.2
-0.3
+0.1
-0.2
+0.2
stress
nitrate 200 mM
+0.1
-0.2
-0.1
+0.6
-0.2
stress
Paraquat dichloride 0.032 mg/mL
-0.3
+0.1
-0.1
+0.1
+0.5
carbon source
L-Ornithine
-0.4
+0.1
-0.0
+0.5
+0.1
survival
4C survival; 672 hrs
-0.3
-0.0
+0.3
+0.1
+0.3
stress
Doxycycline hyclate 0.0002 mg/ml
+0.2
-0.1
-0.0
-0.1
+0.6
denitrifying
Nitrate reduction, replicate B
+0.3
-0.0
+0.2
+0.5
-0.3
stress
Nalidixic 0.004 mg/ml
+0.1
-0.1
+0.3
+0.2
+0.3
carbon source
L-Citrulline
+0.4
-0.0
-0.1
+1.1
-0.4
carbon source
L-Citrulline
+0.2
+0.2
+0.1
+0.6
-0.2
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