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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_14820 and AO353_14825 are separated by 0 nucleotides
AO353_14825 and AO353_14830 are separated by 0 nucleotides
AO353_14830 and AO353_14835 are separated by 159 nucleotides
AO353_14835 and AO353_14840 are separated by 196 nucleotides
AO353_14820: AO353_14820 - deoxyribodipyrimidine photolyase, at 3,280,140 to 3,281,606
_14820
AO353_14825: AO353_14825 - MerR family transcriptional regulator, at 3,281,607 to 3,282,551
_14825
AO353_14830: AO353_14830 - hypothetical protein, at 3,282,552 to 3,283,514
_14830
AO353_14835: AO353_14835 - FAD-dependent oxidoreductase, at 3,283,674 to 3,284,660
_14835
AO353_14840: AO353_14840 - NAD-dependent dehydratase, at 3,284,857 to 3,285,759
_14840
Group
Condition
AO353
_14820
AO353
_14825
AO353
_14830
AO353
_14835
AO353
_14840
stress
methylglyoxal 0.009 vol%
-0.1
-0.1
+0.0
-1.0
-0.0
carbon source
Ethanol (C)
-0.2
+0.2
-0.2
-0.7
+0.1
stress
acetate 68 mM
+0.3
-0.3
-0.5
-0.1
-0.1
stress
Cobalt chloride 0.32 mM
+0.2
-0.3
-0.2
-0.4
+0.2
carbon source
Carnitine Hydrochloride (C)
-0.1
+0.3
+0.1
-0.3
-0.3
stress
Cisplatin 0.006 mg/ml
+0.5
-0.3
-0.1
-0.2
-0.1
carbon source
acetate (C)
+0.2
+0.4
-0.2
-0.8
+0.3
carbon source
D-Trehalose (C)
+0.2
+0.3
-0.0
-0.5
-0.0
nitrogen source
Gly-DL-Asp (N)
-0.1
+0.3
+0.2
-0.4
-0.1
stress
methylglyoxal 0.008 vol%
+0.1
+0.1
+0.1
-0.6
+0.2
carbon source
L-Leucine (C)
-0.2
+0.4
+0.2
-0.4
+0.0
denitrifying
Nitrate reduction, replicate B
-0.3
+0.3
-0.2
-0.1
+0.4
carbon source
L-Ornithine
-0.2
+0.4
+0.2
-0.1
+0.2
stress
Doxycycline hyclate 0.0002 mg/ml
-0.0
+0.3
-0.4
+0.1
+0.5
stress
Spectinomycin 0.15 mg/ml
+0.0
+0.2
-0.1
-0.1
+0.5
motility
outer cut, LB soft agar motility assay
-0.1
+0.4
+0.2
+0.4
-0.2
pH
Minimal media pH9
+0.5
+0.0
+0.1
-0.2
+0.4
carbon source
L-Citrulline
-0.1
+0.3
+0.1
+0.2
+0.4
stress
Spectinomycin 0.2 mg/ml
+0.3
+0.0
-0.3
+0.1
+0.7
stress
Fusidic 0.125 mg/ml
+0.1
-0.0
+0.0
+0.1
+0.9
carbon source
L-Serine (C)
-0.0
+0.3
-0.0
+0.7
+0.1
carbon source
L-Ornithine
+0.1
+0.4
+0.1
+0.2
+0.3
carbon source
L-Citrulline
+0.2
+0.6
-0.1
-0.0
+0.6
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.2
+0.5
+0.4
+0.2
+0.4
stress
Doxycycline hyclate 0.0006 mg/ml
+0.1
-0.2
+0.3
-0.2
+1.4
stress
Lomefloxacin 0.001 mM
+0.3
+0.3
-0.0
+0.3
+0.6
carbon source
propionate (C)
-0.2
+0.6
+0.3
+0.0
+0.9
stress
Sisomicin 0.008 mg/ml
-0.2
+0.5
-0.4
+0.7
+1.3
carbon source
propionate (C)
+0.1
+0.6
-0.0
+0.4
+1.0
stress
Rifampicin 0.005 mg/ml
+0.2
+0.4
+0.1
+0.1
+1.5
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