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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_14665 and AO353_14670 are separated by 46 nucleotides
AO353_14670 and AO353_14675 are separated by 190 nucleotides
AO353_14675 and AO353_14680 are separated by 123 nucleotides
AO353_14680 and AO353_14685 are separated by 116 nucleotides
AO353_14665: AO353_14665 - alpha/beta hydrolase, at 3,248,355 to 3,249,188
_14665
AO353_14670: AO353_14670 - gamma-glutamyltransferase, at 3,249,235 to 3,251,079
_14670
AO353_14675: AO353_14675 - hypothetical protein, at 3,251,270 to 3,252,373
_14675
AO353_14680: AO353_14680 - tRNA-Met, at 3,252,497 to 3,252,573
_14680
AO353_14685: AO353_14685 - chemotaxis protein, at 3,252,690 to 3,254,747
_14685
Group
Condition
AO353
_14665
AO353
_14670
AO353
_14675
AO353
_14680
AO353
_14685
stress
Cisplatin 0.006 mg/ml
-0.2
+0.3
-0.8
N.D.
-0.7
survival
4C survival; 360 hrs
-1.1
-0.2
-0.0
N.D.
+0.1
carbon source
L-Ornithine
-0.6
+0.0
-0.4
N.D.
-0.1
carbon source
L-Citrulline
+0.2
-0.0
-0.1
N.D.
-1.1
carbon source
L-Leucine (C)
-0.2
-0.1
-0.1
N.D.
-0.5
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.3
-0.0
+0.1
N.D.
-0.8
temperature
LB 20C
-0.5
-0.1
-0.1
N.D.
-0.2
carbon source
D-Glucose
-0.6
-0.2
-0.1
N.D.
+0.2
carbon source
L-Ornithine
-0.0
-0.0
-0.4
N.D.
-0.3
carbon source
L-Valine (C)
-0.1
+0.0
-0.2
N.D.
-0.4
anaerobic
N1B4wt with N2E3m denitrifying replicate C
+0.1
-0.2
-0.3
N.D.
-0.3
temperature
LB 30C
-0.5
+0.1
+0.0
N.D.
-0.2
pH
Minimal media pH9
-0.2
-0.4
+0.2
N.D.
-0.3
pH
Minimal media pH7
-0.4
-0.2
-0.1
N.D.
+0.2
carbon source
D-Trehalose (C)
-0.4
-0.2
-0.1
N.D.
+0.3
stress
1-ethyl-3-methylimidazolium acetate 15 mM
-0.2
+0.2
+0.1
N.D.
-0.4
stress
Lomefloxacin 0.001 mM
-0.6
+0.2
+0.2
N.D.
-0.1
stress
copper (II) chloride 2.5 mM
-0.5
+0.2
+0.1
N.D.
+0.3
stress
Rifampicin 0.005 mg/ml
-0.4
+0.1
+0.3
N.D.
+0.1
motility
outer cut, LB soft agar motility assay
+0.3
+0.4
-0.1
N.D.
-0.5
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-0.2
+0.4
-0.2
N.D.
+0.1
carbon source
Ethanol (C)
-0.5
+0.4
+0.1
N.D.
+0.2
stress
Cobalt chloride 0.32 mM
-0.3
+0.2
-0.0
N.D.
+0.3
carbon source
D-Glucose
+0.2
+0.3
+0.2
N.D.
-0.4
denitrifying
Nitrate reduction, replicate B
+0.4
-0.1
+0.2
N.D.
-0.2
stress
Polymyxin B sulfate 4 mg/ml
+0.4
+0.2
-0.1
N.D.
-0.1
nitrogen source
NAG (N)
+0.2
+0.0
-0.2
N.D.
+0.4
stress
Cisplatin 0.006 mg/ml
+0.2
+0.4
+0.3
N.D.
-0.2
carbon source
L-Glutamine (C)
+0.3
-0.2
+0.4
N.D.
+0.3
carbon source
L-Phenylalanine (C)
+0.4
+0.1
+0.1
N.D.
+0.3
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