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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_14390 and AO353_14395 are separated by 4 nucleotides
AO353_14395 and AO353_14400 are separated by 712 nucleotides
AO353_14400 and AO353_14405 are separated by 22 nucleotides
AO353_14405 and AO353_14410 overlap by 11 nucleotides
AO353_14390: AO353_14390 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 3,190,696 to 3,191,178
_14390
AO353_14395: AO353_14395 - poly(A) polymerase, at 3,191,183 to 3,192,586
_14395
AO353_14400: AO353_14400 - Fis family transcriptional regulator, at 3,193,299 to 3,194,732
_14400
AO353_14405: AO353_14405 - ATPase, at 3,194,755 to 3,197,703
_14405
AO353_14410: AO353_14410 - MFS transporter, at 3,197,693 to 3,197,869
_14410
Group
Condition
AO353
_14390
AO353
_14395
AO353
_14400
AO353
_14405
AO353
_14410
carbon source
Trisodium citrate (C)
N.D.
-0.9
-4.0
-2.0
-1.8
carbon source
Trisodium citrate (C)
N.D.
-0.9
-4.1
-2.2
-1.5
carbon source
L-Histidine (C)
N.D.
-0.2
-3.6
-2.3
-1.9
carbon source
D-Lactate (C)
N.D.
-1.9
-3.9
-1.3
-0.3
carbon source
L-Histidine (C)
N.D.
-0.4
-3.3
-1.9
-1.6
carbon source
a-Ketoglutaric (C)
N.D.
-0.7
-4.2
-1.5
-0.8
carbon source
D-Trehalose (C)
N.D.
-1.4
-3.0
-1.6
-1.0
carbon source
D-Lactate (C)
N.D.
-1.3
-4.5
-1.1
-0.2
carbon source
D-Trehalose (C)
N.D.
-1.5
-3.1
-1.7
-0.7
carbon source
D,L-Lactate (C)
N.D.
-1.2
-3.6
-1.5
-0.6
carbon source
Carnitine Hydrochloride (C)
N.D.
-1.0
-3.4
-1.8
-0.6
carbon source
a-Ketoglutaric (C)
N.D.
-0.8
-3.8
-1.6
-0.5
carbon source
m-Inositol (C)
N.D.
-0.9
-3.0
-1.8
-1.0
carbon source
D,L-Lactate (C)
N.D.
-1.1
-3.8
-1.4
-0.3
carbon source
D-Gluconic Acid (C)
N.D.
-1.0
-3.9
-1.0
-0.4
pH
Minimal media pH6
N.D.
-1.3
-3.9
-1.1
-0.0
carbon source
m-Inositol (C)
N.D.
-0.5
-3.2
-1.8
-0.8
carbon source
L-Lactate (C)
N.D.
-0.9
-3.7
-1.2
-0.4
survival
4C survival; 672 hrs
N.D.
-1.3
-2.3
-1.3
-1.3
carbon source
L-Citrulline (C)
N.D.
-2.8
-2.5
-0.8
+0.0
carbon source
L-Arginine (C)
N.D.
-1.1
-3.3
-1.4
-0.3
carbon source
L-Proline (C)
N.D.
+0.0
-2.6
-1.9
-1.6
pH
Minimal media pH8
N.D.
-0.8
-3.9
-0.9
-0.2
carbon source
D-Gluconic Acid (C)
N.D.
-0.6
-3.8
-1.3
-0.2
carbon source
pyruvate (C)
N.D.
-0.2
-4.0
-1.0
-0.7
carbon source
Putrescine (C)
N.D.
-0.2
-3.4
-1.5
-0.7
carbon source
L-Phenylalanine (C)
N.D.
-1.3
-2.9
-1.4
-0.1
nitrogen source
D-Alanine (N)
N.D.
-0.2
-3.3
-1.3
-0.9
carbon source
D-Alanine (C)
N.D.
+0.2
-3.1
-1.7
-0.8
carbon source
L-Isoleucine (C)
N.D.
+0.2
-2.8
-1.8
-1.0
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