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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_14200 and AO353_14205 overlap by 4 nucleotides
AO353_14205 and AO353_14210 overlap by 11 nucleotides
AO353_14210 and AO353_14215 are separated by 124 nucleotides
AO353_14215 and AO353_14220 are separated by 152 nucleotides
AO353_14200: AO353_14200 - transcriptional regulator, at 3,153,128 to 3,154,474
_14200
AO353_14205: AO353_14205 - histidine kinase, at 3,154,471 to 3,156,060
_14205
AO353_14210: AO353_14210 - hypothetical protein, at 3,156,050 to 3,156,283
_14210
AO353_14215: AO353_14215 - DNA transporter, at 3,156,408 to 3,157,424
_14215
AO353_14220: AO353_14220 - ribosomal large subunit pseudouridine synthase D, at 3,157,577 to 3,158,539
_14220
Group
Condition
AO353
_14200
AO353
_14205
AO353
_14210
AO353
_14215
AO353
_14220
survival
4C survival; 192 hrs
-0.1
-0.1
-0.2
N.D.
-4.1
stress
Cobalt chloride 0.32 mM
-0.1
+0.0
-0.1
N.D.
-4.3
temperature
LB 30C
-0.0
+0.1
+0.1
N.D.
-4.1
carbon source
L-Phenylalanine (C)
-0.0
-0.1
-0.7
N.D.
-3.1
nitrogen source
L-Glutamic (N)
-0.1
-0.1
+0.0
N.D.
-3.7
carbon source
L-Isoleucine (C)
-0.3
-0.2
-0.0
N.D.
-3.2
nitrogen source
L-Histidine (N)
-0.1
-0.0
+0.0
N.D.
-3.6
stress
Cisplatin 0.006 mg/ml
-0.3
-0.2
-0.2
N.D.
-3.0
carbon source
L-Alanine (C)
+0.1
-0.2
-0.7
N.D.
-2.8
carbon source
D-Serine (C)
-0.0
-0.0
-0.3
N.D.
-3.2
stress
D-Cycloserine 0.1 mg/ml
+0.0
+0.2
-0.0
N.D.
-3.8
nitrogen source
L-Arginine (N)
-0.0
-0.1
+0.1
N.D.
-3.5
survival
4C survival; 360 hrs
-0.0
+0.0
+0.3
N.D.
-3.8
motility
outer cut, LB soft agar motility assay
-0.1
+0.3
-0.9
N.D.
-2.8
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
+0.1
+0.0
N.D.
-3.4
stress
Nickel (II) chloride 0.625 mM
+0.1
+0.0
-0.1
N.D.
-3.3
carbon source
Tween 20 (C)
-0.1
-0.1
+0.1
N.D.
-3.1
pH
Minimal media pH8
-0.1
+0.1
+0.0
N.D.
-3.2
stress
Cobalt chloride 0.16 mM
+0.1
-0.2
+0.2
N.D.
-3.2
carbon source
Trisodium citrate (C)
-0.1
+0.1
-0.3
N.D.
-2.9
stress
copper (II) chloride 2.5 mM
+0.1
-0.1
-1.3
N.D.
-1.8
motility
outer cut, LB soft agar motility assay
+0.1
+0.4
-0.3
N.D.
-3.3
pH
Minimal media pH6
-0.1
+0.1
-0.1
N.D.
-3.0
nitrogen source
Inosine (N)
+0.1
-0.1
+0.1
N.D.
-3.1
carbon source
L-Valine (C)
+0.2
+0.0
-0.1
N.D.
-3.0
stress
methylglyoxal 0.009 vol%
+0.2
+0.0
+0.4
N.D.
-3.3
carbon source
L-Leucine (C)
+0.1
+0.2
+0.1
N.D.
-3.0
pH
Minimal media pH9
-0.0
+0.2
+0.4
N.D.
-2.8
stress
Lomefloxacin 0.001 mM
+0.1
+0.0
+0.1
N.D.
+3.5
stress
Sisomicin 0.008 mg/ml
-0.1
+0.2
+1.0
N.D.
+5.3
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