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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_14065 and AO353_14070 are separated by 161 nucleotides
AO353_14070 and AO353_14075 are separated by 255 nucleotides
AO353_14075 and AO353_14080 are separated by 127 nucleotides
AO353_14080 and AO353_14085 are separated by 128 nucleotides
AO353_14065: AO353_14065 - hypothetical protein, at 3,127,602 to 3,129,431
_14065
AO353_14070: AO353_14070 - hypothetical protein, at 3,129,593 to 3,130,081
_14070
AO353_14075: AO353_14075 - cation transporter, at 3,130,337 to 3,130,630
_14075
AO353_14080: AO353_14080 - peptidylprolyl isomerase, at 3,130,758 to 3,131,375
_14080
AO353_14085: AO353_14085 - hypothetical protein, at 3,131,504 to 3,131,761
_14085
Group
Condition
AO353
_14065
AO353
_14070
AO353
_14075
AO353
_14080
AO353
_14085
stress
methylglyoxal 0.008 vol%
-0.2
-1.2
-1.0
-0.2
+0.2
stress
Cobalt chloride 0.16 mM
-0.0
-0.0
-0.1
-0.2
-2.1
stress
Gentamicin 0.006 mg/ml
-0.1
-0.5
-0.2
-0.7
-0.5
carbon source
L-Tryptophan (C)
-0.1
-0.7
+0.1
-0.4
-0.4
stress
Cisplatin 0.006 mg/ml
-0.2
+0.1
-0.2
-0.1
-1.0
nitrogen source
L-Histidine (N)
-0.1
-0.2
-0.1
-0.1
-1.0
carbon source
L-Citrulline
-0.3
+0.4
+0.1
-0.7
-1.0
stress
Fusidic 0.125 mg/ml
-0.6
-0.2
-0.4
-0.1
-0.1
stress
Sisomicin 0.008 mg/ml
-0.4
-1.0
-0.4
-0.1
+0.5
stress
Tetracycline 0.0016 mg/ml
-0.3
-0.5
-0.2
-0.1
-0.3
motility
outer cut, LB soft agar motility assay
+0.1
-0.1
+0.0
-0.8
-0.6
stress
Chloramphenicol 0.0025 mg/ml
+0.0
+0.0
-0.2
-0.0
-1.3
stress
sodium fluoride 6.25 mM
+0.0
-0.3
+0.2
-0.1
-0.9
pH
Minimal media pH9
+0.2
-1.0
+0.1
+0.1
-0.3
carbon source
L-Leucine (C)
-0.0
-0.3
-0.8
+0.4
+0.1
carbon source
L-Ornithine
-0.3
+0.2
+0.0
+0.2
-0.9
survival
4C survival; 672 hrs
+0.3
+0.3
+0.0
-0.7
-0.5
carbon source
acetate (C)
-0.2
-0.4
+0.1
-0.5
+0.5
carbon source
L-Ornithine
-0.3
+0.3
+0.0
+0.1
-0.7
pH
Minimal media pH7
+0.2
+0.3
+0.2
+0.0
-0.8
carbon source
L-Valine (C)
-0.1
+0.2
-0.2
-0.5
+0.5
carbon source
D-Glucose (C)
+0.2
+0.2
-0.2
-0.3
+0.4
motility
outer cut, LB soft agar motility assay
+0.2
+0.0
+0.0
-0.8
+0.9
stress
Cholin acetate 19 mM
+0.0
+0.7
-0.3
-0.2
+0.2
motility
outer cut, LB soft agar motility assay
+0.0
+0.2
-0.3
-0.2
+0.8
carbon source
L-Citrulline
-0.4
+0.3
-0.1
+0.3
+0.6
carbon source
L-Citrulline
-0.5
-0.4
+0.3
+0.6
+0.8
pH
Minimal media pH9
+0.1
+0.5
+0.2
+0.6
-0.2
stress
Thallium(I) acetate 0.008 mg/ml
+0.2
-0.0
+0.4
-0.0
+0.7
stress
methylglyoxal 0.009 vol%
+1.2
+2.0
+2.6
+0.7
+0.2
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