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Gene
Fitness
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_13950 and AO353_13955 are separated by 203 nucleotides
AO353_13955 and AO353_13960 are separated by 343 nucleotides
AO353_13960 and AO353_13965 are separated by 45 nucleotides
AO353_13965 and AO353_13970 are separated by 284 nucleotides
AO353_13950: AO353_13950 - 50S rRNA methyltransferase, at 3,098,725 to 3,099,849
_13950
AO353_13955: AO353_13955 - hypothetical protein, at 3,100,053 to 3,100,769
_13955
AO353_13960: AO353_13960 - ferredoxin-NADP reductase, at 3,101,113 to 3,101,889
_13960
AO353_13965: AO353_13965 - large-conductance mechanosensitive channel, at 3,101,935 to 3,102,348
_13965
AO353_13970: AO353_13970 - catalase, at 3,102,633 to 3,104,174
_13970
Group
Condition
AO353
_13950
AO353
_13955
AO353
_13960
AO353
_13965
AO353
_13970
stress
Thallium(I) acetate 0.008 mg/ml
-0.4
-0.0
-2.5
+0.1
-0.1
stress
Paraquat dichloride 0.032 mg/mL
+0.3
-0.1
-3.6
+0.3
+0.2
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
+0.1
-2.3
-0.1
-0.3
stress
Thallium(I) acetate 0.016 mg/ml
+0.5
+0.1
-2.4
-0.1
-0.1
stress
Thallium(I) acetate 0.016 mg/ml
-0.1
+0.2
-2.4
+0.4
-0.0
lb
LB
-0.1
+0.1
-0.0
-1.0
-0.1
anaerobic
N1B4wt with N2E3m denitrifying replicate C
-0.8
+0.2
-0.2
+0.5
-0.1
stress
Doxycycline hyclate 0.0006 mg/ml
+0.4
-0.2
+0.0
-0.8
+0.1
carbon source
propionate (C)
-0.8
+0.1
+0.2
+0.5
+0.1
motility
outer cut, LB soft agar motility assay
-0.2
+0.5
-0.0
-0.4
+0.3
stress
Cholin acetate 38 mM
-0.5
+0.1
+0.1
+0.6
-0.0
stress
acetate 68 mM
-0.5
+0.1
-0.1
+0.6
+0.1
carbon source
butyrate (C)
-0.4
+0.3
+0.1
+0.4
+0.0
motility
outer cut, LB soft agar motility assay
+0.7
+0.3
+0.1
-0.8
+0.2
carbon source
L-Alanine (C)
-0.5
+0.4
+0.2
+0.6
+0.0
pH
Minimal media pH9
+0.3
-0.3
+0.1
+0.3
+0.3
carbon source
L-Valine (C)
+0.3
+0.3
+0.3
+0.2
-0.2
carbon source
L-Arginine (C)
-0.2
+0.2
+0.2
+0.6
+0.1
stress
nitrate 200 mM
+0.1
+0.3
+0.2
+0.5
-0.1
stress
A22 0.002 mg/ml
+0.5
+0.1
-0.0
+0.5
+0.1
carbon source
L-Citrulline
+0.5
+0.2
-0.2
+0.7
-0.1
carbon source
L-Ornithine
-0.0
+0.3
+0.3
+0.4
+0.2
carbon source
Trisodium citrate (C)
+0.5
+0.2
-0.1
+0.4
+0.2
nitrogen source
L-Glutamic (N)
+0.4
+0.3
-0.0
+0.5
+0.1
carbon source
pyruvate (C)
+0.3
+0.2
+0.0
+0.5
+0.2
carbon source
a-Ketoglutaric (C)
+0.5
+0.3
+0.0
+0.4
+0.1
nitrogen source
Glycine (N)
+0.5
+0.3
+0.1
+0.3
+0.2
carbon source
D-Trehalose (C)
+0.3
+0.1
-0.0
+0.8
+0.2
carbon source
L-Citrulline
+0.4
-0.3
+0.1
+1.1
+0.4
carbon source
L-Citrulline
+0.9
+0.1
+0.3
+0.7
-0.2
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