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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_13775 and AO353_13780 are separated by 75 nucleotides
AO353_13780 and AO353_13785 are separated by 125 nucleotides
AO353_13785 and AO353_13790 are separated by 526 nucleotides
AO353_13790 and AO353_13795 are separated by 119 nucleotides
AO353_13775: AO353_13775 - pilus assembly protein TadE, at 3,062,042 to 3,062,488
_13775
AO353_13780: AO353_13780 - peptidase A24, at 3,062,564 to 3,063,034
_13780
AO353_13785: AO353_13785 - LuxR family transcriptional regulator, at 3,063,160 to 3,063,927
_13785
AO353_13790: AO353_13790 - hypothetical protein, at 3,064,454 to 3,064,843
_13790
AO353_13795: AO353_13795 - hypothetical protein, at 3,064,963 to 3,065,715
_13795
Group
Condition
AO353
_13775
AO353
_13780
AO353
_13785
AO353
_13790
AO353
_13795
nitrogen source
Uridine (N)
-0.2
-0.5
-0.2
-0.2
-0.1
carbon source
D-Fructose (C)
-0.4
-0.1
-0.1
-0.3
+0.1
carbon source
L-Ornithine
-0.9
-0.1
-0.0
+0.1
+0.0
carbon source
D-Alanine (C)
-0.4
+0.1
-0.1
+0.2
-0.4
stress
copper (II) chloride 2.5 mM
-0.4
-0.2
+0.3
-0.2
-0.0
carbon source
D-Glucose
-0.2
+0.3
-0.4
-0.2
+0.0
carbon source
L-Ornithine
-0.1
+0.5
-0.3
+0.0
-0.6
carbon source
L-Serine (C)
-0.2
-0.2
+0.3
-0.2
-0.2
nitrogen source
Parabanic Acid (N)
+0.2
+0.1
+0.1
-0.3
-0.5
nitrogen source
Putrescine (N)
-0.2
-0.3
+0.2
-0.2
+0.2
nitrogen source
L-Phenylalanine (N)
+0.2
-0.5
+0.2
-0.2
-0.2
motility
outer cut, LB soft agar motility assay
+0.3
-0.4
-0.4
+0.2
-0.0
pH
Minimal media pH9
-0.4
-0.3
+0.3
-0.2
+0.2
stress
Cisplatin 0.006 mg/ml
-0.8
+0.4
+0.4
-0.5
+0.2
carbon source
D-Glucose
-0.4
-0.1
+0.1
-0.2
+0.3
motility
outer cut, LB soft agar motility assay
+0.3
-0.2
+0.0
-0.5
+0.2
carbon source
L-Citrulline
-0.5
+0.4
-0.1
+0.2
+0.1
stress
Doxycycline hyclate 0.0006 mg/ml
-0.5
+0.4
+0.5
-0.0
-0.3
carbon source
L-Citrulline
+0.1
-0.4
+0.3
+0.5
-0.2
carbon source
L-Citrulline
-0.2
-0.1
+0.2
-0.2
+0.5
stress
Cisplatin 0.006 mg/ml
-0.1
+0.3
+0.3
-0.3
+0.0
carbon source
L-Phenylalanine (C)
+0.3
+0.1
-0.5
+0.3
+0.0
stress
acetate 68 mM
+0.1
+0.4
+0.1
-0.3
-0.1
carbon source
L-Leucine (C)
+0.4
+0.2
-0.3
-0.2
+0.1
stress
Choline Lysine 12 mM
+0.1
+0.4
+0.2
-0.3
+0.1
stress
Sisomicin 0.008 mg/ml
+0.0
-0.2
-0.1
+0.4
+0.5
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.2
+0.9
+0.4
-0.2
-0.1
motility
outer cut, LB soft agar motility assay
+0.5
-0.0
+0.1
+0.5
-0.1
carbon source
L-Valine (C)
+0.4
+0.3
-0.1
+0.4
-0.0
carbon source
acetate (C)
+0.0
+0.2
+0.2
+0.4
+0.2
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