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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_13720 and AO353_13725 are separated by 233 nucleotides
AO353_13725 and AO353_13730 overlap by 4 nucleotides
AO353_13730 and AO353_13735 are separated by 226 nucleotides
AO353_13735 and AO353_13740 are separated by 293 nucleotides
AO353_13720: AO353_13720 - arginine decarboxylase, at 3,048,207 to 3,050,120
_13720
AO353_13725: AO353_13725 - type VI secretion protein, at 3,050,354 to 3,051,736
_13725
AO353_13730: AO353_13730 - hypothetical protein, at 3,051,733 to 3,052,518
_13730
AO353_13735: AO353_13735 - MATE family efflux transporter, at 3,052,745 to 3,054,085
_13735
AO353_13740: AO353_13740 - MFS transporter, at 3,054,379 to 3,054,672
_13740
Group
Condition
AO353
_13720
AO353
_13725
AO353
_13730
AO353
_13735
AO353
_13740
stress
methylglyoxal 0.009 vol%
-2.3
+0.1
+0.0
-0.1
-0.1
stress
Benzalkonium Chloride 0.01 mg/ml
-1.0
-0.4
-0.3
-0.2
-0.7
stress
Tetracycline 0.0016 mg/ml
-1.5
-0.4
-0.1
-0.3
-0.2
stress
Lomefloxacin 0.001 mM
-1.1
-0.3
-0.7
-0.4
+0.4
carbon source
L-Arginine (C)
-2.0
-0.2
+0.0
+0.1
-0.1
carbon source
L-Arginine (C)
-2.2
+0.0
-0.1
+0.1
+0.1
stress
Spectinomycin 0.2 mg/ml
-1.9
-0.3
+0.1
-0.0
+0.1
stress
Rifampicin 0.005 mg/ml
-1.2
-0.2
+0.1
+0.1
-0.4
carbon source
acetate (C)
-1.5
-0.2
+0.1
-0.1
+0.0
nitrogen source
L-Arginine (N)
-1.1
+0.1
+0.3
-0.1
-0.7
stress
Cobalt chloride 0.32 mM
-1.5
-0.2
+0.2
+0.1
-0.2
stress
Doxycycline hyclate 0.0002 mg/ml
-1.2
+0.2
-0.0
-0.0
-0.5
stress
Spectinomycin 0.15 mg/ml
-1.5
-0.4
+0.1
+0.1
+0.4
stress
sodium fluoride 6.25 mM
-1.1
-0.4
-0.0
+0.1
+0.3
stress
Cobalt chloride 0.32 mM
-1.4
+0.1
-0.1
+0.2
-0.1
stress
Doxycycline hyclate 0.0006 mg/ml
-1.9
+0.3
+0.1
+0.1
+0.4
stress
Cisplatin 0.006 mg/ml
-1.3
+0.2
+0.8
-0.3
+0.2
carbon source
L-Leucine (C)
-0.4
-0.6
-0.1
+0.0
+0.7
carbon source
acetate (C)
-2.0
+0.3
-0.1
+0.6
+0.9
carbon source
L-Citrulline
-0.1
-0.7
+0.1
+0.3
+0.5
carbon source
L-Citrulline
-0.2
-0.2
+0.2
+0.2
+0.8
motility
outer cut, LB soft agar motility assay
+1.0
-0.4
+0.1
-0.3
+0.5
stress
Cisplatin 0.006 mg/ml
-0.8
+0.4
+0.3
+0.3
+0.8
carbon source
L-Ornithine
+2.1
+0.1
+0.0
+0.1
-1.0
stress
Nickel (II) chloride 0.625 mM
+0.1
-0.4
+0.0
-0.4
+2.0
motility
outer cut, LB soft agar motility assay
+1.2
-0.1
+0.1
-0.3
+0.6
carbon source
L-Ornithine
+2.3
-0.0
-0.0
+0.3
-0.2
pH
Minimal media pH9
+0.9
+0.1
+0.3
+0.3
+0.7
carbon source
L-Ornithine
+3.4
+0.2
+0.3
-0.2
-0.2
carbon source
L-Ornithine
+4.7
+0.2
-0.2
+0.3
-0.6
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