Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_13710 and AO353_13715 are separated by 262 nucleotidesAO353_13715 and AO353_13720 are separated by 218 nucleotidesAO353_13720 and AO353_13725 are separated by 233 nucleotidesAO353_13725 and AO353_13730 overlap by 4 nucleotides AO353_13710: AO353_13710 - NUDIX hydrolase, at 3,046,785 to 3,047,354 _13710 AO353_13715: AO353_13715 - translation initiation factor Sui1, at 3,047,617 to 3,047,988 _13715 AO353_13720: AO353_13720 - arginine decarboxylase, at 3,048,207 to 3,050,120 _13720 AO353_13725: AO353_13725 - type VI secretion protein, at 3,050,354 to 3,051,736 _13725 AO353_13730: AO353_13730 - hypothetical protein, at 3,051,733 to 3,052,518 _13730
Group Condition AO353_13710 AO353_13715 AO353_13720 AO353_13725 AO353_13730
stress methylglyoxal 0.009 vol% -0.3 +0.1 -2.3 +0.1 +0.0
carbon source L-Arginine (C) +0.2 -0.1 -2.2 +0.0 -0.1
stress Cobalt chloride 0.32 mM -0.0 -0.9 -1.4 +0.1 -0.1
carbon source m-Inositol (C) -0.1 -1.8 -0.1 -0.1 +0.0
carbon source acetate (C) +0.6 -0.9 -2.0 +0.3 -0.1
stress Benzalkonium Chloride 0.01 mg/ml +0.1 -0.4 -1.0 -0.4 -0.3
stress Chloramphenicol 0.004 mg/ml +0.1 -1.2 -0.7 -0.1 +0.0
stress Cobalt chloride 0.32 mM +0.3 -0.6 -1.5 -0.2 +0.2
carbon source L-Arginine (C) +0.2 +0.3 -2.0 -0.2 +0.0
stress Spectinomycin 0.15 mg/ml -0.1 +0.4 -1.5 -0.4 +0.1
temperature LB 30C +0.1 -1.6 -0.1 +0.1 -0.1
nitrogen source L-Arginine (N) -0.1 -0.6 -1.1 +0.1 +0.3
carbon source acetate (C) +0.2 +0.1 -1.5 -0.2 +0.1
stress Doxycycline hyclate 0.0006 mg/ml +0.1 +0.2 -1.9 +0.3 +0.1
stress Spectinomycin 0.2 mg/ml +0.1 +1.0 -1.9 -0.3 +0.1
anaerobic Anaerobic, acetate donor; nitrate and iron -0.3 -1.1 -0.0 +0.4 +0.2
stress Cisplatin 0.006 mg/ml -0.2 -0.1 -1.3 +0.2 +0.8
stress Rifampicin 0.005 mg/ml +0.2 +0.4 -1.2 -0.2 +0.1
stress Cisplatin 0.006 mg/ml +0.1 -0.6 -0.8 +0.4 +0.3
stress Sisomicin 0.008 mg/ml -0.1 +1.2 -1.1 -0.4 -0.1
stress Tetracycline 0.0016 mg/ml -0.1 +1.5 -1.5 -0.4 -0.1
stress Lomefloxacin 0.001 mM +0.1 +1.7 -1.1 -0.3 -0.7
stress Doxycycline hyclate 0.0002 mg/ml +0.0 +0.7 -1.2 +0.2 -0.0
carbon source L-Ornithine -0.4 -0.7 +2.3 -0.0 -0.0
motility outer cut, LB soft agar motility assay +0.1 +0.7 +1.0 -0.4 +0.1
motility outer cut, LB soft agar motility assay -0.4 +1.2 +0.9 -0.3 +0.0
carbon source L-Ornithine -0.1 -0.4 +2.1 +0.1 +0.0
motility outer cut, LB soft agar motility assay +0.2 +1.0 +1.2 -0.1 +0.1
carbon source L-Ornithine -0.6 -0.5 +4.7 +0.2 -0.2
carbon source L-Ornithine -0.2 +0.1 +3.4 +0.2 +0.3
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