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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_13690 and AO353_13695 are separated by 251 nucleotides
AO353_13695 and AO353_13700 are separated by 52 nucleotides
AO353_13700 and AO353_13705 are separated by 291 nucleotides
AO353_13705 and AO353_13710 are separated by 3 nucleotides
AO353_13690: AO353_13690 - thiol:disulfide interchange protein, at 3,039,723 to 3,041,486
_13690
AO353_13695: AO353_13695 - chemotaxis protein, at 3,041,738 to 3,043,699
_13695
AO353_13700: AO353_13700 - diguanylate cyclase, at 3,043,752 to 3,045,422
_13700
AO353_13705: AO353_13705 - hypothetical protein, at 3,045,714 to 3,046,781
_13705
AO353_13710: AO353_13710 - NUDIX hydrolase, at 3,046,785 to 3,047,354
_13710
Group
Condition
AO353
_13690
AO353
_13695
AO353
_13700
AO353
_13705
AO353
_13710
carbon source
Ethanol (C)
-0.9
-0.2
+0.0
-0.5
+0.0
carbon source
Ethanol (C)
-1.3
-0.3
+0.2
-0.0
-0.0
carbon source
D-Lactate (C)
-1.4
+0.1
+0.0
-0.3
+0.2
stress
Spectinomycin 0.2 mg/ml
+0.0
-0.3
-0.0
-0.8
+0.1
carbon source
L-Ornithine
-0.8
+0.1
+0.1
-0.2
-0.2
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.0
-0.9
+0.1
-0.0
-0.3
carbon source
L-Ornithine
-0.6
-0.1
+0.2
+0.1
-0.6
anaerobic
N1B4wt with N2E3m denitrifying replicate C
-0.9
+0.1
+0.2
-0.3
+0.1
carbon source
propionate (C)
-0.4
-0.3
+0.0
-0.4
+0.1
carbon source
acetate (C)
-1.1
-0.1
+0.0
-0.4
+0.6
carbon source
propionate (C)
-0.9
+0.1
+0.2
-0.5
+0.2
stress
Chloride 500 mM
+0.1
-0.4
+0.2
-0.5
-0.1
carbon source
succinate (C)
-0.6
-0.3
-0.1
+0.0
+0.3
nitrogen source
L-Glutamine (N)
-0.8
-0.3
+0.1
+0.2
+0.2
stress
acetate 34 mM
+0.1
+0.3
-0.6
-0.2
-0.2
stress
Cholin acetate 19 mM
-0.2
+0.2
-0.6
+0.2
-0.1
stress
Cholin acetate 10 mM
-0.1
+0.3
-0.6
+0.1
-0.1
nitrogen source
L-Glutamic (N)
-0.7
+0.1
+0.1
+0.2
-0.1
stress
methylglyoxal 0.009 vol%
+0.1
+0.3
+0.2
-0.5
-0.3
stress
acetate 68 mM
+0.2
+0.5
-0.7
+0.0
-0.1
carbon source
L-Serine (C)
-0.3
-0.4
+0.2
+0.2
+0.3
carbon source
D-Glucose (C)
+0.2
-0.1
+0.1
-0.4
+0.3
stress
nitrate 200 mM
+0.1
-0.0
+0.8
-0.2
-0.3
nitrogen source
L-tyrosine (N)
+0.1
+0.4
+0.3
-0.3
+0.1
carbon source
L-Citrulline
+0.0
+0.3
+0.3
+0.5
-0.2
motility
outer cut, LB soft agar motility assay
+0.1
-0.2
+2.3
-0.5
-0.4
stress
Benzalkonium Chloride 0.012 mg/ml
+0.0
+0.4
+0.1
+0.6
+0.1
denitrifying
Nitrate reduction, replicate C
+0.2
+0.3
+0.2
+0.3
+0.2
motility
outer cut, LB soft agar motility assay
-0.1
+0.2
+2.2
-0.3
+0.2
motility
outer cut, LB soft agar motility assay
+0.1
+0.5
+2.4
-0.2
+0.1
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