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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_13390 and AO353_13395 are separated by 192 nucleotides
AO353_13395 and AO353_13400 are separated by 38 nucleotides
AO353_13400 and AO353_13405 are separated by 23 nucleotides
AO353_13405 and AO353_13410 overlap by 4 nucleotides
AO353_13390: AO353_13390 - N-acylglucosamine 2-epimerase, at 2,969,456 to 2,970,589
_13390
AO353_13395: AO353_13395 - protein hupE, at 2,970,782 to 2,971,354
_13395
AO353_13400: AO353_13400 - urease accessory protein UreG, at 2,971,393 to 2,972,007
_13400
AO353_13405: AO353_13405 - urease accessory protein UreF, at 2,972,031 to 2,972,705
_13405
AO353_13410: AO353_13410 - urease accessory protein UreE, at 2,972,702 to 2,973,202
_13410
Group
Condition
AO353
_13390
AO353
_13395
AO353
_13400
AO353
_13405
AO353
_13410
nitrogen source
Urea (N)
-0.5
-2.9
-3.4
-2.0
-4.0
nitrogen source
Inosine (N)
-0.7
-4.0
-2.6
-1.9
-2.6
nitrogen source
Parabanic Acid (N)
-0.3
-1.2
-2.2
-3.7
-3.3
nitrogen source
Adenine (N)
-0.2
-2.0
-1.9
-2.4
-2.2
stress
Doxycycline hyclate 0.0006 mg/ml
-1.3
+0.3
-0.6
-2.7
-0.4
stress
Nickel (II) chloride 0.625 mM
-2.9
-0.8
-0.4
+0.4
+0.1
stress
Fusidic 0.125 mg/ml
-0.2
-1.1
-0.1
-1.4
-0.4
stress
Doxycycline hyclate 0.0002 mg/ml
-0.8
-1.1
-0.4
-0.5
-0.4
carbon source
L-Citrulline
-1.9
+0.0
-0.0
-0.7
-0.4
stress
Lomefloxacin 0.001 mM
-1.1
-0.2
-0.2
-1.1
-0.1
carbon source
L-Glutamine (C)
-1.7
-0.0
-0.3
-0.4
+0.0
carbon source
L-Glutamic (C)
-1.1
-1.2
-0.0
-0.2
+0.2
carbon source
D-Glucose
-0.0
-0.1
-0.8
-1.0
-0.3
carbon source
L-Citrulline
-1.4
-0.2
-0.7
-0.1
+0.1
carbon source
L-Glutamine (C)
-1.7
-0.2
+0.2
-0.4
-0.0
stress
Polymyxin B sulfate 4 mg/ml
-0.1
-1.5
-0.1
-0.5
+0.2
stress
Rifampicin 0.005 mg/ml
-1.4
+0.2
-0.3
-0.2
-0.3
carbon source
acetate (C)
-0.8
-1.3
+0.1
+0.1
+0.1
stress
Nickel (II) chloride 0.625 mM
-1.6
-0.4
+0.0
+0.2
+0.2
carbon source
L-Proline (C)
-0.9
+0.5
-0.0
-0.8
-0.2
pH
Minimal media pH9
+0.2
-1.0
+0.5
-0.7
-0.3
nitrogen source
L-Lysine (N)
+0.0
-0.6
-0.1
-1.0
+0.4
carbon source
D-Serine (C)
-0.5
-1.1
+0.1
+0.7
-0.2
carbon source
L-Citrulline
-1.2
-0.3
-0.3
+0.5
+0.1
stress
Paraquat dichloride 0.032 mg/mL
+0.3
+0.2
+0.1
-1.7
+0.2
stress
Spectinomycin 0.2 mg/ml
-1.0
+0.8
+0.1
-0.2
-0.6
stress
Tetracycline 0.0016 mg/ml
-1.5
+0.4
+0.0
+0.3
-0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.6
-0.8
-0.3
+0.3
-0.3
carbon source
L-Citrulline
-1.1
+0.9
+0.3
+0.1
-0.1
stress
Cisplatin 0.006 mg/ml
+0.6
-0.6
-0.3
+1.7
-0.1
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