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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_13335 and AO353_13340 are separated by 364 nucleotides
AO353_13340 and AO353_13345 are separated by 185 nucleotides
AO353_13345 and AO353_13350 are separated by 2 nucleotides
AO353_13350 and AO353_13355 overlap by 4 nucleotides
AO353_13335: AO353_13335 - FAD-dependent oxidoreductase, at 2,956,374 to 2,957,657
_13335
AO353_13340: AO353_13340 - amino acid ABC transporter substrate-binding protein, at 2,958,022 to 2,959,155
_13340
AO353_13345: AO353_13345 - branched-chain amino acid transporter permease subunit LivH, at 2,959,341 to 2,960,255
_13345
AO353_13350: AO353_13350 - branched-chain amino acid ABC transporter permease, at 2,960,258 to 2,961,556
_13350
AO353_13355: AO353_13355 - ABC transporter ATP-binding protein, at 2,961,553 to 2,962,428
_13355
Group
Condition
AO353
_13335
AO353
_13340
AO353
_13345
AO353
_13350
AO353
_13355
carbon source
L-Isoleucine (C)
-0.3
-1.4
-1.4
-1.6
-1.5
nitrogen source
Gly-Glu (N)
-0.1
-0.9
-1.1
-1.0
-1.0
carbon source
L-Leucine (C)
-0.1
-1.2
-0.8
-1.0
-0.9
carbon source
L-Proline (C)
-0.3
-0.7
-0.9
-1.1
-0.6
carbon source
L-Proline (C)
+0.0
-0.8
-0.8
-0.9
-0.9
nitrogen source
L-Phenylalanine (N)
-0.1
-0.8
-0.9
-0.6
-0.3
stress
Doxycycline hyclate 0.0006 mg/ml
-0.8
-0.5
-0.0
+0.2
-0.3
nitrogen source
D-Alanine (N)
-0.1
-0.2
-0.4
-0.1
-0.3
stress
Lomefloxacin 0.001 mM
-0.3
+0.1
-0.0
+0.1
-0.7
carbon source
L-Asparagine (C)
+0.0
-0.3
-0.2
-0.3
-0.1
carbon source
D-Alanine (C)
-0.3
-0.1
-0.2
-0.1
+0.1
carbon source
L-Citrulline
+0.0
-0.1
-0.1
+0.0
-0.5
pH
Minimal media pH8
-0.1
-0.0
+0.1
+0.0
-0.5
stress
Spectinomycin 0.2 mg/ml
+0.1
-0.1
+0.0
-0.1
-0.4
stress
copper (II) chloride 2.5 mM
-0.1
-0.2
+0.2
+0.1
-0.3
stress
Cholin acetate 10 mM
-0.1
+0.1
-0.2
+0.1
-0.3
carbon source
D-Glucose
-0.3
+0.2
+0.0
-0.2
+0.1
nitrogen source
Parabanic Acid (N)
-0.4
-0.2
+0.1
+0.1
+0.2
carbon source
propionate (C)
+0.1
-0.2
+0.1
+0.2
-0.3
stress
Cisplatin 0.006 mg/ml
+0.2
-0.1
+0.0
-0.4
+0.3
nitrogen source
L-Glutamine (N)
-0.1
-0.1
+0.2
-0.2
+0.3
carbon source
Glycerol (C)
-0.1
+0.2
-0.0
-0.1
+0.3
carbon source
L-Citrulline
+0.4
-0.0
+0.2
-0.1
+0.1
motility
outer cut, LB soft agar motility assay
-0.2
+0.3
+0.1
+0.3
+0.1
carbon source
L-Citrulline
+0.3
+0.2
-0.0
-0.1
+0.3
stress
sodium fluoride 6.25 mM
+0.2
+0.2
+0.1
-0.1
+0.2
pH
Minimal media pH9
+0.0
-0.0
-0.0
+0.3
+0.6
carbon source
L-Serine (C)
+0.3
+0.2
+0.2
+0.3
+0.1
carbon source
L-Ornithine
+0.2
+0.5
+0.2
+0.1
-0.0
carbon source
L-Ornithine
+0.3
+0.5
+0.2
+0.2
+0.4
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