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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_13280 and AO353_13285 are separated by 88 nucleotides
AO353_13285 and AO353_13290 overlap by 1 nucleotides
AO353_13290 and AO353_13295 are separated by 291 nucleotides
AO353_13295 and AO353_13300 are separated by 68 nucleotides
AO353_13280: AO353_13280 - IMP dehydrogenase, at 2,939,648 to 2,942,923
_13280
AO353_13285: AO353_13285 - molybdopterin oxidoreductase, at 2,943,012 to 2,945,498
_13285
AO353_13290: AO353_13290 - transglutaminase, at 2,945,498 to 2,946,400
_13290
AO353_13295: AO353_13295 - hypothetical protein, at 2,946,692 to 2,946,883
_13295
AO353_13300: AO353_13300 - LOG family protein, at 2,946,952 to 2,947,539
_13300
Group
Condition
AO353
_13280
AO353
_13285
AO353
_13290
AO353
_13295
AO353
_13300
nitrogen source
Parabanic Acid (N)
+0.1
-0.4
-0.1
N.D.
-1.5
nitrogen source
Gly-Glu (N)
-0.0
-1.1
-1.5
N.D.
+0.9
nitrogen source
L-tyrosine (N)
+0.1
-0.7
-0.6
N.D.
-0.3
nitrogen source
Urea (N)
-0.1
-0.8
-0.5
N.D.
-0.2
nitrogen source
L-Tryptophan (N)
+0.0
-0.8
-0.9
N.D.
+0.3
nitrogen source
Uridine (N)
+0.0
-0.7
-0.7
N.D.
+0.3
nitrogen source
Thymine (N)
-0.1
-0.5
-0.8
N.D.
+0.5
carbon source
L-Citrulline
+0.2
-0.1
-1.2
N.D.
+0.5
carbon source
L-Citrulline
-0.1
-0.3
-0.6
N.D.
+0.6
carbon source
L-Citrulline
+0.0
-0.2
-0.8
N.D.
+0.9
carbon source
L-Citrulline
+0.1
-0.6
+0.3
N.D.
+0.5
motility
outer cut, LB soft agar motility assay
+0.1
-0.4
-0.4
N.D.
+1.0
carbon source
D-Glucose
+0.0
-0.3
-0.3
N.D.
+1.1
motility
outer cut, LB soft agar motility assay
+0.0
-0.6
+0.1
N.D.
+1.2
carbon source
L-Ornithine
+0.3
-0.2
-0.1
N.D.
+1.0
carbon source
D-Glucose
+0.4
-0.2
+0.2
N.D.
+0.8
carbon source
L-Asparagine (C)
-0.1
-0.1
+0.2
N.D.
+1.2
carbon source
pyruvate (C)
-0.1
+0.2
+0.1
N.D.
+1.2
carbon source
L-Leucine (C)
-0.1
+0.2
+0.3
N.D.
+1.1
motility
outer cut, LB soft agar motility assay
+0.1
+0.2
-0.3
N.D.
+1.5
denitrifying
Nitrate reduction, replicate B
+0.3
+0.1
-0.2
N.D.
+1.3
carbon source
L-Asparagine (C)
+0.1
-0.0
+0.3
N.D.
+1.3
carbon source
a-Ketoglutaric (C)
+0.1
+0.1
+0.5
N.D.
+1.0
survival
4C survival; 360 hrs
+0.0
+0.0
+0.2
N.D.
+1.3
carbon source
propionate (C)
+0.2
+0.2
+0.2
N.D.
+1.5
carbon source
propionate (C)
+0.2
+0.1
+0.2
N.D.
+1.7
carbon source
acetate (C)
+0.1
+0.1
+0.3
N.D.
+1.8
carbon source
acetate (C)
+0.0
+0.1
+0.8
N.D.
+1.7
carbon source
L-Serine (C)
+0.1
-0.2
+0.3
N.D.
+2.5
survival
4C survival; 672 hrs
+0.0
+0.1
+0.4
N.D.
+2.2
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