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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_13050 and AO353_13055 are separated by 78 nucleotides
AO353_13055 and AO353_13060 are separated by 177 nucleotides
AO353_13060 and AO353_13065 are separated by 342 nucleotides
AO353_13065 and AO353_13070 are separated by 134 nucleotides
AO353_13050: AO353_13050 - DNA topoisomerase IV, at 2,890,125 to 2,891,108
_13050
AO353_13055: AO353_13055 - DNA topoisomerase IV, at 2,891,187 to 2,893,451
_13055
AO353_13060: AO353_13060 - hypothetical protein, at 2,893,629 to 2,894,336
_13060
AO353_13065: AO353_13065 - histidine kinase, at 2,894,679 to 2,896,220
_13065
AO353_13070: AO353_13070 - phosphoserine phosphatase, at 2,896,355 to 2,897,569
_13070
Group
Condition
AO353
_13050
AO353
_13055
AO353
_13060
AO353
_13065
AO353
_13070
carbon source
D-Lactate (C)
-0.2
N.D.
-0.2
N.D.
-5.4
nitrogen source
L-Tryptophan (N)
-0.4
N.D.
-0.1
N.D.
-4.9
carbon source
Putrescine (C)
-0.2
N.D.
+0.1
N.D.
-5.3
nitrogen source
Uridine (N)
-0.4
N.D.
-0.0
N.D.
-4.9
carbon source
L-Citrulline
-1.4
N.D.
-0.4
N.D.
-3.4
carbon source
a-Ketoglutaric (C)
+0.2
N.D.
-0.3
N.D.
-5.1
carbon source
D-Glucose
-1.0
N.D.
+0.1
N.D.
-4.2
carbon source
L-Lactate (C)
-0.2
N.D.
-0.2
N.D.
-4.7
nitrogen source
Putrescine (N)
-0.2
N.D.
-0.5
N.D.
-4.3
pH
Minimal media pH8
-0.0
N.D.
-0.0
N.D.
-4.9
carbon source
D-Gluconic Acid (C)
-0.2
N.D.
-0.3
N.D.
-4.4
carbon source
D-Lactate (C)
-0.2
N.D.
-0.0
N.D.
-4.6
carbon source
D-Fructose (C)
+0.2
N.D.
-0.0
N.D.
-5.0
carbon source
D,L-Lactate (C)
+0.3
N.D.
-0.1
N.D.
-5.0
carbon source
L-Citrulline (C)
+0.1
N.D.
-0.3
N.D.
-4.5
carbon source
a-Ketoglutaric (C)
-0.0
N.D.
+0.1
N.D.
-4.8
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.2
N.D.
+0.1
N.D.
-4.9
nitrogen source
NAG (N)
-0.4
N.D.
+0.1
N.D.
-4.4
carbon source
succinate (C)
+0.2
N.D.
-0.0
N.D.
-4.9
nitrogen source
L-tyrosine (N)
+0.6
N.D.
-0.2
N.D.
-5.0
pH
Minimal media pH9
+0.5
N.D.
-0.8
N.D.
-4.2
pH
Minimal media pH6
+0.2
N.D.
+0.2
N.D.
-5.0
carbon source
Trisodium citrate (C)
+0.5
N.D.
-0.3
N.D.
-4.7
carbon source
L-Lactate (C)
+0.3
N.D.
-0.1
N.D.
-4.6
pH
Minimal media pH6
+0.1
N.D.
+0.3
N.D.
-4.9
nitrogen source
L-Citrulline (N)
+0.2
N.D.
+0.2
N.D.
-4.9
carbon source
L-Ornithine
-0.9
N.D.
+0.3
N.D.
-3.7
carbon source
D-Glucose (C)
+0.3
N.D.
-0.2
N.D.
-4.4
nitrogen source
Urea (N)
+0.6
N.D.
-0.2
N.D.
-4.3
nitrogen source
nitrite (N)
+0.5
N.D.
+0.0
N.D.
-4.5
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