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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_12835 and AO353_12840 are separated by 252 nucleotides
AO353_12840 and AO353_12845 are separated by 152 nucleotides
AO353_12845 and AO353_12850 are separated by 77 nucleotides
AO353_12850 and AO353_12855 are separated by 234 nucleotides
AO353_12835: AO353_12835 - hypothetical protein, at 2,836,080 to 2,836,436
_12835
AO353_12840: AO353_12840 - lactate dehydrogenase, at 2,836,689 to 2,837,525
_12840
AO353_12845: AO353_12845 - peptide methionine sulfoxide reductase, at 2,837,678 to 2,838,325
_12845
AO353_12850: AO353_12850 - diguanylate cyclase, at 2,838,403 to 2,841,096
_12850
AO353_12855: AO353_12855 - phosphodiesterase, at 2,841,331 to 2,842,725
_12855
Group
Condition
AO353
_12835
AO353
_12840
AO353
_12845
AO353
_12850
AO353
_12855
motility
outer cut, LB soft agar motility assay
-0.8
-0.9
-0.3
-1.6
+0.4
motility
outer cut, LB soft agar motility assay
-0.3
+0.2
-0.7
-2.3
+0.3
motility
outer cut, LB soft agar motility assay
+1.4
-0.2
-1.1
-2.4
+0.0
carbon source
D-Glucose
-1.0
-0.0
-1.1
+0.1
+0.2
pH
Minimal media pH9
-1.1
-0.6
+0.2
+0.0
+0.2
carbon source
L-Ornithine
-0.5
-0.1
-0.7
-0.0
+0.1
stress
A22 0.002 mg/ml
-1.0
+0.0
-0.2
-0.1
-0.1
nitrogen source
Gly-DL-Asp (N)
-0.6
-0.3
-0.2
-0.2
+0.1
carbon source
D-Glucose
-1.2
-0.2
-0.0
+0.1
+0.3
carbon source
L-Ornithine
-0.8
+0.6
-0.5
-0.2
+0.1
stress
perchlorate 75 mM
+0.3
-0.7
-0.3
-0.3
+0.1
carbon source
L-Ornithine
-0.3
+0.3
-0.8
-0.0
+0.3
stress
Sisomicin 0.008 mg/ml
-0.5
+0.3
-0.3
-0.1
+0.3
carbon source
L-Citrulline
+0.2
+0.3
-0.5
+0.0
+0.2
stress
Gentamicin 0.006 mg/ml
-0.5
+0.4
+0.3
+0.1
+0.1
stress
Cisplatin 0.006 mg/ml
-0.9
+0.5
+0.4
+0.4
+0.3
stress
Cisplatin 0.006 mg/ml
-0.4
+0.2
+0.0
+0.4
+0.3
lb
LB
-0.3
-0.1
+0.5
+0.5
+0.0
stress
acetate 68 mM
+0.1
-0.2
+0.5
+0.7
+0.0
stress
acetate 17 mM
-0.4
+0.0
+0.6
+0.9
-0.0
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-0.4
-0.1
+0.8
+1.1
-0.1
stress
1-ethyl-3-methylimidazolium acetate 30 mM
+0.1
+0.0
+0.4
+0.7
+0.3
stress
Tetracycline 0.0016 mg/ml
+0.8
+0.3
-0.1
+0.2
+0.3
stress
1-ethyl-3-methylimidazolium acetate 15 mM
+0.1
-0.3
+0.6
+1.1
-0.0
stress
Cholin acetate 38 mM
+0.3
-0.2
+0.7
+1.2
-0.0
stress
Lomefloxacin 0.001 mM
+0.6
+0.8
+0.3
+0.2
+0.1
stress
acetate 34 mM
-0.0
+0.0
+0.7
+1.1
+0.1
stress
Cholin acetate 10 mM
-0.0
+0.0
+0.7
+1.1
+0.1
stress
Cholin acetate 19 mM
+0.4
-0.2
+1.2
+1.2
-0.0
survival
4C survival; 672 hrs
+0.2
+0.0
+1.6
+1.3
+0.1
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AO353_12845
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