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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_12630 and AO353_12635 overlap by 4 nucleotides
AO353_12635 and AO353_12640 overlap by 14 nucleotides
AO353_12640 and AO353_12645 overlap by 4 nucleotides
AO353_12645 and AO353_12650 overlap by 17 nucleotides
AO353_12630: AO353_12630 - methyltransferase, at 2,780,170 to 2,780,910
_12630
AO353_12635: AO353_12635 - FAD-dependent oxidoreductase, at 2,780,907 to 2,782,154
_12635
AO353_12640: AO353_12640 - sodium:proton antiporter, at 2,782,141 to 2,783,301
_12640
AO353_12645: AO353_12645 - hypothetical protein, at 2,783,298 to 2,785,637
_12645
AO353_12650: AO353_12650 - hypothetical protein, at 2,785,621 to 2,786,187
_12650
Group
Condition
AO353
_12630
AO353
_12635
AO353
_12640
AO353
_12645
AO353
_12650
motility
outer cut, LB soft agar motility assay
-0.5
-0.8
-0.3
+0.1
-4.4
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.2
+0.2
-0.6
-0.3
-3.9
stress
Cisplatin 0.006 mg/ml
-0.1
-0.7
-0.2
-0.3
-2.4
stress
Sisomicin 0.008 mg/ml
+0.2
-0.6
+0.0
-0.7
-2.2
stress
copper (II) chloride 2.5 mM
+0.2
+0.4
-0.0
-0.6
-2.6
stress
Polymyxin B sulfate 4 mg/ml
-0.2
-0.1
+0.0
-0.3
-2.0
carbon source
propionate (C)
+0.1
+0.1
-0.0
-0.1
-2.6
denitrifying
Nitrate reduction, replicate B
-0.6
+0.0
+0.0
+0.0
-1.8
carbon source
Tween 20 (C)
-0.0
-0.4
-0.2
-0.1
-1.6
carbon source
L-Ornithine
-0.2
-0.1
+0.1
-0.3
-1.6
carbon source
L-Citrulline
-0.8
-0.1
-0.3
-0.4
-0.5
stress
Spectinomycin 0.1 mg/ml
-0.5
+0.2
-0.1
-0.4
-1.3
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-0.0
+0.4
-0.1
-0.2
-2.0
carbon source
propionate (C)
+0.1
-0.6
-0.2
+0.1
-1.3
stress
sodium fluoride 6.25 mM
+0.2
+0.2
-0.0
+0.1
-2.1
pH
Minimal media pH6
-0.3
+0.2
-0.2
+0.0
-1.5
pH
Minimal media pH9
+0.5
+0.3
+0.1
+0.1
-2.6
pH
Minimal media pH6
+0.1
-0.3
+0.0
+0.1
-1.5
carbon source
butyrate (C)
-0.3
+0.3
-0.1
-0.0
-1.4
motility
outer cut, LB soft agar motility assay
-0.5
+0.3
-0.1
+0.5
-1.4
stress
Cobalt chloride 0.16 mM
-0.2
+0.3
+0.2
-0.3
-1.2
stress
Nalidixic 0.004 mg/ml
+0.3
-0.2
+0.2
-0.0
-1.4
stress
Vanillin 1.25 mM
+0.4
+0.1
+0.1
-0.0
-1.6
stress
Spectinomycin 0.15 mg/ml
+0.1
+0.4
+0.0
-0.6
-1.0
stress
Paraquat dichloride 0.032 mg/mL
-0.1
+0.5
+0.4
-0.4
-1.4
carbon source
acetate (C)
+0.1
+0.5
-0.2
-0.1
-1.3
stress
Doxycycline hyclate 0.0006 mg/ml
-0.5
-0.1
+0.3
+0.2
+1.2
carbon source
L-Citrulline
-0.7
+0.8
+0.1
+0.2
+1.1
stress
Lomefloxacin 0.001 mM
-0.1
+0.5
+0.3
+0.2
+1.1
carbon source
D-Glucose
+0.5
+0.5
+0.3
-0.3
+1.1
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