Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_12465 and AO353_12470 are separated by 72 nucleotidesAO353_12470 and AO353_12475 are separated by 213 nucleotidesAO353_12475 and AO353_12480 overlap by 1 nucleotidesAO353_12480 and AO353_12485 overlap by 4 nucleotides AO353_12465: AO353_12465 - hypothetical protein, at 2,742,665 to 2,743,054 _12465 AO353_12470: AO353_12470 - peptidase, at 2,743,127 to 2,745,568 _12470 AO353_12475: AO353_12475 - pilus assembly protein PilM, at 2,745,782 to 2,746,846 _12475 AO353_12480: AO353_12480 - pilus assembly protein PilN, at 2,746,846 to 2,747,412 _12480 AO353_12485: AO353_12485 - pilus assembly protein PilP, at 2,747,409 to 2,748,032 _12485
Group Condition AO353_12465 AO353_12470 AO353_12475 AO353_12480 AO353_12485
stress Benzalkonium Chloride 0.012 mg/ml -0.4 -0.8 -0.5 -0.6 -0.5
carbon source propionate (C) +0.1 -2.9 +0.1 +0.5 +0.1
motility outer cut, LB soft agar motility assay -0.0 -1.5 -0.0 -0.4 -0.2
stress Doxycycline hyclate 0.0002 mg/ml -0.0 -1.6 +0.0 -0.3 +0.0
motility outer cut, LB soft agar motility assay -0.1 -2.0 -0.1 +0.4 -0.1
stress Benzalkonium Chloride 0.01 mg/ml -0.0 -0.5 -0.7 -0.2 -0.4
stress Doxycycline hyclate 0.0006 mg/ml -0.1 -1.2 -0.0 -0.9 +0.4
stress Cisplatin 0.006 mg/ml -1.1 -0.5 -0.1 -0.3 +0.3
motility outer cut, LB soft agar motility assay -0.0 -1.7 +0.1 +0.1 -0.0
anaerobic Anaerobic, acetate donor; nitrate and iron +0.3 -0.6 -0.7 -0.4 -0.1
carbon source propionate (C) +0.7 -2.4 +0.1 +0.2 +0.2
stress Rifampicin 0.005 mg/ml +0.3 -1.4 +0.1 +0.0 +0.0
survival 4C survival; 672 hrs +0.4 -1.4 +0.3 +0.4 +0.0
carbon source acetate (C) +0.5 -0.3 +0.3 -0.5 -0.1
carbon source L-Tryptophan (C) -0.6 +0.6 -0.0 +0.3 -0.1
anaerobic N1B4wt with N2E3m denitrifying replicate C +0.0 +1.1 +0.1 -0.5 -0.2
carbon source L-Valine (C) +0.3 +0.7 +0.3 -0.4 -0.3
carbon source Cytidine (C) +0.2 +1.2 -0.1 -0.1 -0.1
carbon source D-Ribose (C) +0.1 +1.3 -0.0 -0.0 -0.2
carbon source L-Alanine (C) +0.3 +0.4 +0.3 +0.6 -0.3
carbon source L-Ornithine -0.3 +0.9 +0.3 +0.3 +0.2
carbon source L-Citrulline -0.2 +0.6 +0.4 +0.5 +0.0
carbon source L-Citrulline +0.2 +0.9 -0.1 +0.4 +0.2
carbon source D-Ribose (C) +0.1 +1.5 -0.0 +0.0 -0.1
carbon source D-Glucose +0.1 +0.5 +0.4 +0.5 +0.3
carbon source L-Ornithine +0.4 +0.9 +0.3 -0.0 +0.3
carbon source L-Ornithine +0.7 +1.2 +0.2 -0.1 +0.1
stress nitrate 200 mM +0.3 +2.0 +0.2 -0.1 +0.1
stress perchlorate 75 mM +0.6 +2.6 -0.0 +0.1 -0.2
carbon source L-Ornithine +0.6 +1.0 +0.4 +0.7 +0.3
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