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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_12465 and AO353_12470 are separated by 72 nucleotides
AO353_12470 and AO353_12475 are separated by 213 nucleotides
AO353_12475 and AO353_12480 overlap by 1 nucleotides
AO353_12480 and AO353_12485 overlap by 4 nucleotides
AO353_12465: AO353_12465 - hypothetical protein, at 2,742,665 to 2,743,054
_12465
AO353_12470: AO353_12470 - peptidase, at 2,743,127 to 2,745,568
_12470
AO353_12475: AO353_12475 - pilus assembly protein PilM, at 2,745,782 to 2,746,846
_12475
AO353_12480: AO353_12480 - pilus assembly protein PilN, at 2,746,846 to 2,747,412
_12480
AO353_12485: AO353_12485 - pilus assembly protein PilP, at 2,747,409 to 2,748,032
_12485
Group
Condition
AO353
_12465
AO353
_12470
AO353
_12475
AO353
_12480
AO353
_12485
stress
Benzalkonium Chloride 0.012 mg/ml
-0.4
-0.8
-0.5
-0.6
-0.5
carbon source
propionate (C)
+0.1
-2.9
+0.1
+0.5
+0.1
motility
outer cut, LB soft agar motility assay
-0.0
-1.5
-0.0
-0.4
-0.2
stress
Doxycycline hyclate 0.0002 mg/ml
-0.0
-1.6
+0.0
-0.3
+0.0
motility
outer cut, LB soft agar motility assay
-0.1
-2.0
-0.1
+0.4
-0.1
stress
Benzalkonium Chloride 0.01 mg/ml
-0.0
-0.5
-0.7
-0.2
-0.4
stress
Doxycycline hyclate 0.0006 mg/ml
-0.1
-1.2
-0.0
-0.9
+0.4
stress
Cisplatin 0.006 mg/ml
-1.1
-0.5
-0.1
-0.3
+0.3
motility
outer cut, LB soft agar motility assay
-0.0
-1.7
+0.1
+0.1
-0.0
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.3
-0.6
-0.7
-0.4
-0.1
carbon source
propionate (C)
+0.7
-2.4
+0.1
+0.2
+0.2
stress
Rifampicin 0.005 mg/ml
+0.3
-1.4
+0.1
+0.0
+0.0
survival
4C survival; 672 hrs
+0.4
-1.4
+0.3
+0.4
+0.0
carbon source
acetate (C)
+0.5
-0.3
+0.3
-0.5
-0.1
carbon source
L-Tryptophan (C)
-0.6
+0.6
-0.0
+0.3
-0.1
anaerobic
N1B4wt with N2E3m denitrifying replicate C
+0.0
+1.1
+0.1
-0.5
-0.2
carbon source
L-Valine (C)
+0.3
+0.7
+0.3
-0.4
-0.3
carbon source
Cytidine (C)
+0.2
+1.2
-0.1
-0.1
-0.1
carbon source
D-Ribose (C)
+0.1
+1.3
-0.0
-0.0
-0.2
carbon source
L-Alanine (C)
+0.3
+0.4
+0.3
+0.6
-0.3
carbon source
L-Ornithine
-0.3
+0.9
+0.3
+0.3
+0.2
carbon source
L-Citrulline
-0.2
+0.6
+0.4
+0.5
+0.0
carbon source
L-Citrulline
+0.2
+0.9
-0.1
+0.4
+0.2
carbon source
D-Ribose (C)
+0.1
+1.5
-0.0
+0.0
-0.1
carbon source
D-Glucose
+0.1
+0.5
+0.4
+0.5
+0.3
carbon source
L-Ornithine
+0.4
+0.9
+0.3
-0.0
+0.3
carbon source
L-Ornithine
+0.7
+1.2
+0.2
-0.1
+0.1
stress
nitrate 200 mM
+0.3
+2.0
+0.2
-0.1
+0.1
stress
perchlorate 75 mM
+0.6
+2.6
-0.0
+0.1
-0.2
carbon source
L-Ornithine
+0.6
+1.0
+0.4
+0.7
+0.3
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