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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_12415 and AO353_12420 are separated by 259 nucleotides
AO353_12420 and AO353_12425 are separated by 218 nucleotides
AO353_12425 and AO353_12430 are separated by 57 nucleotides
AO353_12430 and AO353_12435 are separated by 287 nucleotides
AO353_12415: AO353_12415 - poly(R)-hydroxyalkanoic acid synthase, at 2,729,251 to 2,730,930
_12415
AO353_12420: AO353_12420 - predicted FeS cluster maintenance protein
(from data)
, at 2,731,190 to 2,731,570
_12420
AO353_12425: AO353_12425 - ATP-dependent protease ATP-binding subunit HslU, at 2,731,789 to 2,733,129
_12425
AO353_12430: AO353_12430 - ATP-dependent protease subunit HslV, at 2,733,187 to 2,733,717
_12430
AO353_12435: AO353_12435 - cell division protein, at 2,734,005 to 2,734,706
_12435
Group
Condition
AO353
_12415
AO353
_12420
AO353
_12425
AO353
_12430
AO353
_12435
stress
Cobalt chloride 0.16 mM
+0.1
-3.2
N.D.
N.D.
N.D.
stress
Cobalt chloride 0.32 mM
-0.0
-2.8
N.D.
N.D.
N.D.
stress
Cobalt chloride 0.16 mM
+0.1
-2.8
N.D.
N.D.
N.D.
carbon source
Trisodium citrate (C)
-0.1
-2.5
N.D.
N.D.
N.D.
temperature
LB 10C
-0.0
-2.5
N.D.
N.D.
N.D.
carbon source
Trisodium citrate (C)
+0.1
-2.5
N.D.
N.D.
N.D.
stress
copper (II) chloride 2.5 mM
+0.1
-2.3
N.D.
N.D.
N.D.
stress
copper (II) chloride 2.5 mM
-0.0
-2.1
N.D.
N.D.
N.D.
stress
Cobalt chloride 0.32 mM
-0.1
-1.9
N.D.
N.D.
N.D.
nitrogen source
Gly-Glu (N)
+0.5
-2.5
N.D.
N.D.
N.D.
stress
Nickel (II) chloride 0.625 mM
-0.1
-1.9
N.D.
N.D.
N.D.
stress
Thallium(I) acetate 0.016 mg/ml
-0.2
-1.8
N.D.
N.D.
N.D.
stress
Nickel (II) chloride 0.625 mM
+0.0
-1.9
N.D.
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
-0.1
-1.8
N.D.
N.D.
N.D.
stress
Polymyxin B sulfate 4 mg/ml
-0.3
-1.6
N.D.
N.D.
N.D.
stress
sodium fluoride 6.25 mM
-0.1
-1.7
N.D.
N.D.
N.D.
carbon source
D-Glucose (C)
-0.0
-1.8
N.D.
N.D.
N.D.
carbon source
Fumarate (C)
+0.2
-1.8
N.D.
N.D.
N.D.
nitrogen source
Uridine (N)
+0.1
-1.8
N.D.
N.D.
N.D.
stress
Thallium(I) acetate 0.016 mg/ml
+0.2
-1.9
N.D.
N.D.
N.D.
nitrogen source
Gly-DL-Asp (N)
+0.2
-1.8
N.D.
N.D.
N.D.
stress
Paraquat dichloride 0.032 mg/mL
+0.3
-1.9
N.D.
N.D.
N.D.
carbon source
Glycerol (C)
+0.2
-1.7
N.D.
N.D.
N.D.
stress
Cisplatin 0.006 mg/ml
+0.2
+1.7
N.D.
N.D.
N.D.
stress
perchlorate 75 mM
-0.3
+2.7
N.D.
N.D.
N.D.
stress
methylglyoxal 0.009 vol%
+0.1
+2.4
N.D.
N.D.
N.D.
stress
Fusidic 0.125 mg/ml
+0.1
+2.6
N.D.
N.D.
N.D.
stress
Rifampicin 0.005 mg/ml
-0.3
+3.4
N.D.
N.D.
N.D.
stress
nitrate 200 mM
-0.1
+3.2
N.D.
N.D.
N.D.
stress
Sisomicin 0.008 mg/ml
-0.1
+5.3
N.D.
N.D.
N.D.
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