Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_12245 and AO353_12250 are separated by 528 nucleotidesAO353_12250 and AO353_12255 are separated by 151 nucleotidesAO353_12255 and AO353_12260 are separated by 170 nucleotidesAO353_12260 and AO353_12265 overlap by 4 nucleotides AO353_12245: AO353_12245 - hypothetical protein, at 2,692,408 to 2,692,980 _12245 AO353_12250: AO353_12250 - Urocanate hydratase (EC 4.2.1.49) (from data), at 2,693,509 to 2,695,212 _12250 AO353_12255: AO353_12255 - sulfonate ABC transporter substrate-binding protein, at 2,695,364 to 2,696,830 _12255 AO353_12260: AO353_12260 - ABC transporter permease, at 2,697,001 to 2,697,852 _12260 AO353_12265: AO353_12265 - hypothetical protein, at 2,697,849 to 2,698,673 _12265
Group Condition AO353_12245 AO353_12250 AO353_12255 AO353_12260 AO353_12265
carbon source L-Histidine (C) -3.6 -3.6 -2.4 -0.7 -0.6
carbon source L-Histidine (C) -2.6 -3.3 -2.5 -0.9 -0.4
nitrogen source L-Histidine (N) -0.3 -2.7 -1.1 -0.7 -1.1
nitrogen source L-Histidine (N) -0.4 -2.5 -1.1 -0.5 -0.4
pH Minimal media pH9 -0.1 -0.7 -0.6 -1.2 -1.2
carbon source acetate (C) -2.5 +0.0 +0.1 -1.3 +0.2
pH Minimal media pH9 -0.4 -0.6 -0.4 -1.0 -0.9
carbon source L-Phenylalanine (C) -1.2 -0.6 -0.3 -0.7 -0.0
carbon source L-Ornithine -1.0 -0.8 -0.0 +0.0 -0.2
carbon source L-Valine (C) -0.6 -0.3 -0.2 -0.4 -0.2
motility outer cut, LB soft agar motility assay -1.1 -0.4 +0.2 -0.3 +0.4
carbon source propionate (C) -0.6 -0.3 +0.2 -0.5 +0.1
stress acetate 17 mM -1.0 +0.0 +0.1 -0.2 -0.2
stress Chloramphenicol 0.0025 mg/ml -0.7 +0.1 -0.1 -0.3 -0.2
carbon source L-Ornithine +0.3 -0.6 -0.1 -0.7 -0.0
stress Lomefloxacin 0.001 mM -0.1 -0.2 -0.5 -1.0 +0.5
carbon source L-Leucine (C) -0.2 -0.5 +0.0 -0.6 +0.4
motility outer cut, LB soft agar motility assay +0.3 +0.1 +0.0 -0.9 -0.2
anaerobic Anaerobic, acetate donor; nitrate and iron -1.3 +0.8 +0.0 -0.4 +0.3
stress methylglyoxal 0.009 vol% +0.6 +0.0 +0.1 -0.6 -0.4
carbon source L-Alanine (C) +0.7 -0.4 -0.1 -0.3 +0.1
carbon source D-Alanine (C) +0.7 -0.4 +0.1 -0.4 +0.1
carbon source D-Glucose +0.7 -0.6 -0.1 +0.1 -0.0
carbon source L-Citrulline +0.6 -0.1 +0.2 -0.5 +0.2
carbon source L-Citrulline +0.7 -0.4 +0.0 +0.3 -0.2
carbon source L-Asparagine (C) -0.2 +0.1 +0.2 +0.6 +0.4
stress Doxycycline hyclate 0.0006 mg/ml +1.4 -0.1 -0.1 -0.3 +0.2
carbon source L-Asparagine (C) +0.1 +0.2 +0.1 +0.5 +0.6
nitrogen source L-Lysine (N) -0.4 +1.6 +0.1 +0.2 +0.4
nitrogen source L-Lysine (N) +0.4 +1.5 +0.1 +0.3 +0.2
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