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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_12130 and AO353_12135 are separated by 230 nucleotides
AO353_12135 and AO353_12140 are separated by 76 nucleotides
AO353_12140 and AO353_12145 are separated by 477 nucleotides
AO353_12145 and AO353_12150 overlap by 4 nucleotides
AO353_12130: AO353_12130 - preprotein translocase subunit SecB, at 2,664,476 to 2,664,958
_12130
AO353_12135: AO353_12135 - rRNA methylase, at 2,665,189 to 2,665,644
_12135
AO353_12140: AO353_12140 - hypothetical protein, at 2,665,721 to 2,666,083
_12140
AO353_12145: AO353_12145 - nitrogen regulation protein NR(I), at 2,666,561 to 2,667,997
_12145
AO353_12150: AO353_12150 - histidine kinase, at 2,667,994 to 2,669,079
_12150
Group
Condition
AO353
_12130
AO353
_12135
AO353
_12140
AO353
_12145
AO353
_12150
nitrogen source
L-Tryptophan (N)
-0.1
+0.1
+0.2
-4.3
-4.3
nitrogen source
Carnitine Hydrochloride (N)
-0.3
-0.4
+0.2
-3.9
-4.0
nitrogen source
Uridine (N)
-0.3
-0.0
+0.4
-4.1
-4.4
nitrogen source
L-tyrosine (N)
-0.4
-0.6
+0.1
-3.1
-4.1
nitrogen source
Adenine (N)
-0.0
-0.2
-0.1
-3.4
-3.8
nitrogen source
Thymine (N)
-0.3
+0.0
+0.3
-3.8
-3.5
nitrogen source
L-Threonine (N)
-0.4
+0.2
+0.2
-4.0
-3.4
nitrogen source
Urea (N)
-0.8
+0.3
+0.5
-3.3
-3.3
nitrogen source
D-Alanine (N)
-0.3
-0.1
+0.2
-3.5
-2.9
nitrogen source
L-Threonine (N)
+0.0
+0.5
-0.1
-3.5
-3.4
nitrogen source
NAG (N)
-0.3
-0.2
-0.2
-3.2
-2.5
nitrogen source
Parabanic Acid (N)
-0.3
+0.1
+0.5
-2.7
-3.9
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.0
-0.1
+0.5
-3.4
-3.2
nitrogen source
Gly-Glu (N)
-0.2
-0.5
-0.2
-2.6
-2.4
nitrogen source
nitrite (N)
+0.1
-0.1
+0.4
-2.9
-3.4
nitrogen source
Glycine (N)
-0.4
+0.6
-0.2
-2.8
-3.1
nitrogen source
nitrate (N)
-0.1
+0.2
-0.2
-2.7
-2.8
nitrogen source
Glycine (N)
-0.1
+0.5
+0.2
-3.3
-3.0
nitrogen source
L-Lysine (N)
-0.2
+0.5
+0.2
-2.9
-2.7
nitrogen source
Gly-DL-Asp (N)
-0.0
-0.2
+0.2
-2.3
-2.8
nitrogen source
L-Phenylalanine (N)
-0.2
-0.1
+0.3
-2.6
-2.3
carbon source
D-Alanine (C)
-0.1
-0.3
+0.2
-1.8
-2.8
carbon source
D-Serine (C)
+0.2
-0.8
-0.2
-2.6
-1.4
nitrogen source
L-Serine (N)
+0.0
-0.0
+0.2
-4.0
-1.0
nitrogen source
L-Lysine (N)
+0.2
+0.1
-0.2
-2.8
-1.7
nitrogen source
Inosine (N)
-0.4
+0.4
+0.6
-2.8
-2.2
nitrogen source
L-Serine (N)
-0.0
+0.4
+0.1
-2.9
-1.4
motility
outer cut, LB soft agar motility assay
+1.9
-0.5
+2.4
-1.3
+0.3
motility
outer cut, LB soft agar motility assay
+1.4
+0.0
+2.4
-0.8
+0.2
stress
Fusidic 0.125 mg/ml
+0.3
+0.6
+0.1
+2.8
+2.0
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