Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_12130 and AO353_12135 are separated by 230 nucleotidesAO353_12135 and AO353_12140 are separated by 76 nucleotidesAO353_12140 and AO353_12145 are separated by 477 nucleotidesAO353_12145 and AO353_12150 overlap by 4 nucleotides AO353_12130: AO353_12130 - preprotein translocase subunit SecB, at 2,664,476 to 2,664,958 _12130 AO353_12135: AO353_12135 - rRNA methylase, at 2,665,189 to 2,665,644 _12135 AO353_12140: AO353_12140 - hypothetical protein, at 2,665,721 to 2,666,083 _12140 AO353_12145: AO353_12145 - nitrogen regulation protein NR(I), at 2,666,561 to 2,667,997 _12145 AO353_12150: AO353_12150 - histidine kinase, at 2,667,994 to 2,669,079 _12150
Group Condition AO353_12130 AO353_12135 AO353_12140 AO353_12145 AO353_12150
nitrogen source L-Tryptophan (N) -0.1 +0.1 +0.2 -4.3 -4.3
nitrogen source Carnitine Hydrochloride (N) -0.3 -0.4 +0.2 -3.9 -4.0
nitrogen source Uridine (N) -0.3 -0.0 +0.4 -4.1 -4.4
nitrogen source L-tyrosine (N) -0.4 -0.6 +0.1 -3.1 -4.1
nitrogen source Adenine (N) -0.0 -0.2 -0.1 -3.4 -3.8
nitrogen source Thymine (N) -0.3 +0.0 +0.3 -3.8 -3.5
nitrogen source L-Threonine (N) -0.4 +0.2 +0.2 -4.0 -3.4
nitrogen source Urea (N) -0.8 +0.3 +0.5 -3.3 -3.3
nitrogen source D-Alanine (N) -0.3 -0.1 +0.2 -3.5 -2.9
nitrogen source L-Threonine (N) +0.0 +0.5 -0.1 -3.5 -3.4
nitrogen source NAG (N) -0.3 -0.2 -0.2 -3.2 -2.5
nitrogen source Parabanic Acid (N) -0.3 +0.1 +0.5 -2.7 -3.9
nitrogen source D-Glucosamine Hydrochloride (N) -0.0 -0.1 +0.5 -3.4 -3.2
nitrogen source Gly-Glu (N) -0.2 -0.5 -0.2 -2.6 -2.4
nitrogen source nitrite (N) +0.1 -0.1 +0.4 -2.9 -3.4
nitrogen source Glycine (N) -0.4 +0.6 -0.2 -2.8 -3.1
nitrogen source nitrate (N) -0.1 +0.2 -0.2 -2.7 -2.8
nitrogen source Glycine (N) -0.1 +0.5 +0.2 -3.3 -3.0
nitrogen source L-Lysine (N) -0.2 +0.5 +0.2 -2.9 -2.7
nitrogen source Gly-DL-Asp (N) -0.0 -0.2 +0.2 -2.3 -2.8
nitrogen source L-Phenylalanine (N) -0.2 -0.1 +0.3 -2.6 -2.3
carbon source D-Alanine (C) -0.1 -0.3 +0.2 -1.8 -2.8
carbon source D-Serine (C) +0.2 -0.8 -0.2 -2.6 -1.4
nitrogen source L-Serine (N) +0.0 -0.0 +0.2 -4.0 -1.0
nitrogen source L-Lysine (N) +0.2 +0.1 -0.2 -2.8 -1.7
nitrogen source Inosine (N) -0.4 +0.4 +0.6 -2.8 -2.2
nitrogen source L-Serine (N) -0.0 +0.4 +0.1 -2.9 -1.4
motility outer cut, LB soft agar motility assay +1.9 -0.5 +2.4 -1.3 +0.3
motility outer cut, LB soft agar motility assay +1.4 +0.0 +2.4 -0.8 +0.2
stress Fusidic 0.125 mg/ml +0.3 +0.6 +0.1 +2.8 +2.0
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