Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_12115 and AO353_12120 are separated by 151 nucleotidesAO353_12120 and AO353_12125 are separated by 1 nucleotidesAO353_12125 and AO353_12130 are separated by 56 nucleotidesAO353_12130 and AO353_12135 are separated by 230 nucleotides AO353_12115: AO353_12115 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 2,662,069 to 2,663,598 _12115 AO353_12120: AO353_12120 - sulfurtransferase, at 2,663,750 to 2,664,163 _12120 AO353_12125: AO353_12125 - glutaredoxin, at 2,664,165 to 2,664,419 _12125 AO353_12130: AO353_12130 - preprotein translocase subunit SecB, at 2,664,476 to 2,664,958 _12130 AO353_12135: AO353_12135 - rRNA methylase, at 2,665,189 to 2,665,644 _12135
Group Condition AO353_12115 AO353_12120 AO353_12125 AO353_12130 AO353_12135
carbon source pyruvate (C) -4.2 N.D. -0.1 -0.1 -1.0
carbon source Trisodium citrate (C) -3.8 N.D. -0.3 -0.4 -0.6
carbon source Putrescine (C) -3.9 N.D. -0.2 -0.1 -0.5
stress copper (II) chloride 2.5 mM -2.9 N.D. -0.5 -0.6 -0.7
stress copper (II) chloride 2.5 mM -2.2 N.D. -1.0 -1.6 +0.1
carbon source butyrate (C) -3.8 N.D. -0.2 -0.6 -0.1
carbon source m-Inositol (C) -3.0 N.D. -0.2 -0.5 -0.8
carbon source D-Fructose (C) -4.2 N.D. -0.4 -0.1 +0.2
stress 1-ethyl-3-methylimidazolium acetate 15 mM -3.3 N.D. -0.6 -0.7 +0.2
carbon source propionate (C) -3.8 N.D. -0.1 -0.3 -0.2
carbon source Cytidine (C) -3.6 N.D. -0.1 -0.5 -0.3
stress acetate 34 mM -3.5 N.D. -0.5 -1.0 +0.6
carbon source D-Glucose (C) -4.5 N.D. +0.1 -0.0 +0.2
carbon source L-Lactate (C) -4.6 N.D. +0.2 +0.3 -0.2
carbon source a-Ketoglutaric (C) -4.6 N.D. +0.4 +0.1 -0.0
carbon source Trisodium citrate (C) -3.4 N.D. +0.1 -0.5 -0.4
carbon source D-Ribose (C) -3.9 N.D. -0.0 -0.4 +0.2
nitrogen source Urea (N) -3.4 N.D. -0.2 -0.8 +0.3
stress Cholin acetate 10 mM -3.1 N.D. -0.6 -0.7 +0.5
nitrogen source L-tyrosine (N) -3.3 N.D. +0.4 -0.4 -0.6
stress 1-ethyl-3-methylimidazolium acetate 20 mM -2.8 N.D. -0.5 -0.8 +0.6
carbon source succinate (C) -3.7 N.D. +0.5 +0.3 -0.2
carbon source a-Ketoglutaric (C) -3.6 N.D. +0.4 -0.3 +0.5
stress Tetracycline 0.0016 mg/ml -2.2 N.D. +0.0 -1.8 +0.9
stress 1-ethyl-3-methylimidazolium acetate 30 mM -2.0 N.D. -0.3 -1.3 +1.0
carbon source succinate (C) -3.4 N.D. +0.3 +0.6 +0.2
carbon source D-Lactate (C) -3.3 N.D. +0.5 +0.4 +0.2
stress Rifampicin 0.005 mg/ml -2.2 N.D. +0.6 +1.0 +0.8
motility outer cut, LB soft agar motility assay -1.6 N.D. +1.7 +1.6 -0.0
motility outer cut, LB soft agar motility assay -0.4 N.D. +2.0 +1.9 -0.5
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