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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_12115 and AO353_12120 are separated by 151 nucleotides
AO353_12120 and AO353_12125 are separated by 1 nucleotides
AO353_12125 and AO353_12130 are separated by 56 nucleotides
AO353_12130 and AO353_12135 are separated by 230 nucleotides
AO353_12115: AO353_12115 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 2,662,069 to 2,663,598
_12115
AO353_12120: AO353_12120 - sulfurtransferase, at 2,663,750 to 2,664,163
_12120
AO353_12125: AO353_12125 - glutaredoxin, at 2,664,165 to 2,664,419
_12125
AO353_12130: AO353_12130 - preprotein translocase subunit SecB, at 2,664,476 to 2,664,958
_12130
AO353_12135: AO353_12135 - rRNA methylase, at 2,665,189 to 2,665,644
_12135
Group
Condition
AO353
_12115
AO353
_12120
AO353
_12125
AO353
_12130
AO353
_12135
carbon source
pyruvate (C)
-4.2
N.D.
-0.1
-0.1
-1.0
carbon source
Trisodium citrate (C)
-3.8
N.D.
-0.3
-0.4
-0.6
carbon source
Putrescine (C)
-3.9
N.D.
-0.2
-0.1
-0.5
stress
copper (II) chloride 2.5 mM
-2.9
N.D.
-0.5
-0.6
-0.7
stress
copper (II) chloride 2.5 mM
-2.2
N.D.
-1.0
-1.6
+0.1
carbon source
butyrate (C)
-3.8
N.D.
-0.2
-0.6
-0.1
carbon source
m-Inositol (C)
-3.0
N.D.
-0.2
-0.5
-0.8
carbon source
D-Fructose (C)
-4.2
N.D.
-0.4
-0.1
+0.2
stress
1-ethyl-3-methylimidazolium acetate 15 mM
-3.3
N.D.
-0.6
-0.7
+0.2
carbon source
propionate (C)
-3.8
N.D.
-0.1
-0.3
-0.2
carbon source
Cytidine (C)
-3.6
N.D.
-0.1
-0.5
-0.3
stress
acetate 34 mM
-3.5
N.D.
-0.5
-1.0
+0.6
carbon source
D-Glucose (C)
-4.5
N.D.
+0.1
-0.0
+0.2
carbon source
L-Lactate (C)
-4.6
N.D.
+0.2
+0.3
-0.2
carbon source
a-Ketoglutaric (C)
-4.6
N.D.
+0.4
+0.1
-0.0
carbon source
Trisodium citrate (C)
-3.4
N.D.
+0.1
-0.5
-0.4
carbon source
D-Ribose (C)
-3.9
N.D.
-0.0
-0.4
+0.2
nitrogen source
Urea (N)
-3.4
N.D.
-0.2
-0.8
+0.3
stress
Cholin acetate 10 mM
-3.1
N.D.
-0.6
-0.7
+0.5
nitrogen source
L-tyrosine (N)
-3.3
N.D.
+0.4
-0.4
-0.6
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-2.8
N.D.
-0.5
-0.8
+0.6
carbon source
succinate (C)
-3.7
N.D.
+0.5
+0.3
-0.2
carbon source
a-Ketoglutaric (C)
-3.6
N.D.
+0.4
-0.3
+0.5
stress
Tetracycline 0.0016 mg/ml
-2.2
N.D.
+0.0
-1.8
+0.9
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-2.0
N.D.
-0.3
-1.3
+1.0
carbon source
succinate (C)
-3.4
N.D.
+0.3
+0.6
+0.2
carbon source
D-Lactate (C)
-3.3
N.D.
+0.5
+0.4
+0.2
stress
Rifampicin 0.005 mg/ml
-2.2
N.D.
+0.6
+1.0
+0.8
motility
outer cut, LB soft agar motility assay
-1.6
N.D.
+1.7
+1.6
-0.0
motility
outer cut, LB soft agar motility assay
-0.4
N.D.
+2.0
+1.9
-0.5
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