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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_11985 and AO353_11990 overlap by 4 nucleotides
AO353_11990 and AO353_11995 are separated by 78 nucleotides
AO353_11995 and AO353_12000 are separated by 13 nucleotides
AO353_12000 and AO353_12005 are separated by 555 nucleotides
AO353_11985: AO353_11985 - ABC transporter permease, at 2,639,170 to 2,639,859
_11985
AO353_11990: AO353_11990 - ABC transporter permease, at 2,639,856 to 2,640,551
_11990
AO353_11995: AO353_11995 - amino acid ABC transporter, at 2,640,630 to 2,641,385
_11995
AO353_12000: AO353_12000 - amino acid transporter, at 2,641,399 to 2,642,172
_12000
AO353_12005: AO353_12005 - GABA permease, at 2,642,728 to 2,644,119
_12005
Group
Condition
AO353
_11985
AO353
_11990
AO353
_11995
AO353
_12000
AO353
_12005
stress
Thallium(I) acetate 0.016 mg/ml
-0.3
-0.2
-0.4
-0.5
+0.1
stress
Thallium(I) acetate 0.016 mg/ml
-0.3
-0.2
-0.3
-0.4
-0.1
denitrifying
Nitrate reduction, replicate B
-0.3
-0.2
-0.4
-0.2
-0.1
stress
Thallium(I) acetate 0.008 mg/ml
-0.3
-0.2
-0.1
-0.4
-0.1
motility
outer cut, LB soft agar motility assay
+0.3
-0.6
-0.4
-0.1
-0.2
stress
Chloride 500 mM
-0.2
-0.4
-0.1
-0.4
+0.2
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.7
-0.2
+0.2
-0.1
-0.0
nitrogen source
L-Arginine (N)
+0.1
-0.2
-0.3
-0.4
+0.1
nitrogen source
L-Arginine (N)
+0.3
-0.1
-0.3
-0.6
+0.2
stress
Cisplatin 0.006 mg/ml
-0.2
-0.1
-0.4
+0.2
+0.1
motility
outer cut, LB soft agar motility assay
-0.1
+0.2
-0.2
+0.2
-0.3
stress
methylglyoxal 0.009 vol%
-0.5
+0.1
+0.4
+0.2
-0.2
carbon source
D-Alanine (C)
+0.3
+0.0
+0.3
+0.2
-0.8
stress
Sisomicin 0.008 mg/ml
+0.3
-0.2
+0.2
-0.3
+0.1
carbon source
L-Arginine (C)
+0.2
+0.1
+0.2
-0.6
+0.2
stress
Doxycycline hyclate 0.0006 mg/ml
+0.2
+0.7
+0.1
-0.2
-0.5
carbon source
L-Citrulline
+0.3
+0.3
-0.0
+0.1
-0.3
carbon source
D-Glucose
+0.4
-0.0
+0.2
+0.1
-0.3
nitrogen source
D-Alanine (N)
+0.1
+0.0
+0.0
+0.6
-0.3
carbon source
L-Ornithine
+0.5
+0.2
+0.1
-0.2
+0.1
nitrogen source
L-Serine (N)
+0.3
+0.3
+0.2
-0.3
+0.1
carbon source
L-Ornithine
+0.2
+0.4
+0.3
+0.2
-0.2
carbon source
D-Glucose
+0.2
+0.2
+0.1
+0.3
+0.2
stress
Cisplatin 0.006 mg/ml
-0.0
+0.4
+0.1
+0.6
+0.0
carbon source
L-Citrulline
+0.5
+0.5
+0.0
+0.1
-0.1
carbon source
L-Ornithine
+0.4
+0.3
+0.2
+0.3
-0.0
carbon source
L-Valine (C)
+0.7
+0.4
+0.2
+0.4
-0.2
carbon source
L-Ornithine
+0.3
+0.4
+0.3
+0.3
+0.1
stress
Nickel (II) chloride 0.625 mM
+0.4
+0.5
+0.4
+0.5
-0.2
stress
Nickel (II) chloride 0.625 mM
+0.3
+0.2
+0.6
+0.6
-0.1
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