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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_11915 and AO353_11920 are separated by 247 nucleotides
AO353_11920 and AO353_11925 are separated by 211 nucleotides
AO353_11925 and AO353_11930 are separated by 25 nucleotides
AO353_11930 and AO353_11935 are separated by 236 nucleotides
AO353_11915: AO353_11915 - agmatine deiminase, at 2,628,923 to 2,630,029
_11915
AO353_11920: AO353_11920 - hypothetical protein, at 2,630,277 to 2,630,477
_11920
AO353_11925: AO353_11925 - protein-disulfide isomerase, at 2,630,689 to 2,631,384
_11925
AO353_11930: AO353_11930 - ketosteroid isomerase, at 2,631,410 to 2,631,805
_11930
AO353_11935: AO353_11935 - hypothetical protein, at 2,632,042 to 2,633,328
_11935
Group
Condition
AO353
_11915
AO353
_11920
AO353
_11925
AO353
_11930
AO353
_11935
stress
Cisplatin 0.006 mg/ml
-1.3
-2.1
+0.3
-0.1
-0.2
stress
Cobalt chloride 0.32 mM
-2.4
-0.6
-0.0
+0.1
-0.2
carbon source
L-Alanine (C)
-1.1
-2.6
+0.4
+0.2
-0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.1
-3.0
-0.4
+0.3
+0.3
carbon source
D-Glucose
-1.1
-0.2
+0.1
-1.1
-0.6
stress
Paraquat dichloride 0.032 mg/mL
-2.6
+0.4
-0.0
-0.2
-0.4
carbon source
L-Valine (C)
-1.8
-0.3
+0.0
-0.2
-0.4
stress
Thallium(I) acetate 0.016 mg/ml
-0.6
-1.2
-0.3
-0.1
-0.5
stress
Cobalt chloride 0.32 mM
-2.4
-0.2
+0.2
+0.0
-0.3
carbon source
L-Arginine (C)
-1.9
-0.2
-0.0
-0.1
-0.4
carbon source
L-Arginine (C)
-1.9
-0.1
-0.1
-0.1
-0.3
stress
methylglyoxal 0.009 vol%
-2.1
-0.3
+0.0
-0.2
-0.1
stress
Doxycycline hyclate 0.0002 mg/ml
-0.6
-0.8
+0.2
-0.2
-1.0
carbon source
acetate (C)
-2.1
-0.2
+0.1
+0.1
-0.4
carbon source
acetate (C)
-0.9
-0.9
+0.1
+0.1
-0.4
motility
outer cut, LB soft agar motility assay
+0.6
-2.1
+0.0
-0.3
-0.1
motility
outer cut, LB soft agar motility assay
+0.7
-1.7
-0.3
-0.1
-0.5
stress
Doxycycline hyclate 0.0006 mg/ml
-1.4
+0.8
-0.3
-0.4
-0.7
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-1.0
+0.4
-0.6
-0.0
-0.3
carbon source
L-Leucine (C)
-1.5
+0.6
+0.0
+0.1
-0.3
carbon source
L-Ornithine
+1.7
-2.1
+0.1
-0.1
-0.5
stress
Cisplatin 0.006 mg/ml
-2.2
+0.2
+0.7
+0.5
-0.0
carbon source
L-Citrulline
-0.7
+1.3
-0.3
-0.2
-0.5
denitrifying
Nitrate reduction, replicate B
+1.1
-1.8
+0.4
-0.2
+0.4
pH
Minimal media pH9
-1.3
+1.5
-0.2
+0.1
+0.0
pH
Minimal media pH9
-1.1
+1.4
+0.1
-0.0
+0.0
carbon source
L-Ornithine
+1.4
+0.3
+0.5
-0.1
-0.6
carbon source
L-Ornithine
+2.4
-0.2
+0.1
-0.0
-0.7
denitrifying
Nitrate reduction, replicate C
+1.2
-0.2
+0.1
+0.4
+0.4
carbon source
L-Ornithine
+2.4
+0.8
+0.1
-0.1
-0.6
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