Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_11855 and AO353_11860 are separated by 50 nucleotidesAO353_11860 and AO353_11865 overlap by 4 nucleotidesAO353_11865 and AO353_11870 are separated by 36 nucleotidesAO353_11870 and AO353_11875 overlap by 4 nucleotides AO353_11855: AO353_11855 - thioesterase, at 2,615,304 to 2,615,759 _11855 AO353_11860: AO353_11860 - Fis family transcriptional regulator, at 2,615,810 to 2,617,213 _11860 AO353_11865: AO353_11865 - ATPase, at 2,617,210 to 2,619,018 _11865 AO353_11870: AO353_11870 - dTDP-4-dehydrorhamnose reductase, at 2,619,055 to 2,619,936 _11870 AO353_11875: AO353_11875 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,619,933 to 2,620,478 _11875
Group Condition AO353_11855 AO353_11860 AO353_11865 AO353_11870 AO353_11875
carbon source Fumarate (C) +0.2 -3.5 -1.5 N.D. N.D.
carbon source Fumarate (C) -0.1 -3.0 -1.7 N.D. N.D.
carbon source L-Malic (C) +0.0 -2.1 -1.7 N.D. N.D.
carbon source L-Malic (C) +0.1 -2.1 -1.7 N.D. N.D.
carbon source succinate (C) +0.0 -3.1 -0.2 N.D. N.D.
carbon source succinate (C) +0.1 -2.5 -0.2 N.D. N.D.
stress Lomefloxacin 0.001 mM -0.3 -0.5 -0.4 N.D. N.D.
stress methylglyoxal 0.009 vol% +0.1 -1.1 -0.0 N.D. N.D.
anaerobic N1B4wt with N2E3m denitrifying replicate C +0.2 -0.4 -0.4 N.D. N.D.
motility outer cut, LB soft agar motility assay -0.0 -0.3 -0.4 N.D. N.D.
stress Fusidic 0.125 mg/ml -0.0 -0.6 +0.1 N.D. N.D.
stress Cisplatin 0.006 mg/ml -0.5 -0.5 +0.5 N.D. N.D.
stress Paraquat dichloride 0.032 mg/mL +0.1 -0.6 +0.0 N.D. N.D.
nitrogen source Gly-DL-Asp (N) -0.1 -0.6 +0.3 N.D. N.D.
carbon source L-Alanine (C) +0.2 -0.4 -0.1 N.D. N.D.
carbon source L-Glutamic (C) +0.2 -0.4 -0.1 N.D. N.D.
carbon source L-Aspartic Acid (C) +0.1 -0.6 +0.2 N.D. N.D.
carbon source m-Inositol (C) +0.2 -0.4 -0.1 N.D. N.D.
nitrogen source L-Serine (N) -0.1 -0.4 +0.3 N.D. N.D.
carbon source a-Ketoglutaric (C) +0.1 -0.5 +0.2 N.D. N.D.
carbon source L-Glutamine (C) +0.1 -0.4 +0.2 N.D. N.D.
carbon source propionate (C) -0.5 +0.4 -0.1 N.D. N.D.
stress 1-ethyl-3-methylimidazolium chloride 170 mM +0.2 -0.4 +0.2 N.D. N.D.
carbon source L-Citrulline -0.3 +0.5 +0.2 N.D. N.D.
carbon source L-Ornithine +0.4 -0.2 +0.2 N.D. N.D.
carbon source D-Alanine (C) -0.1 +0.4 +0.2 N.D. N.D.
carbon source L-Serine (C) +0.1 +0.1 +0.5 N.D. N.D.
carbon source a-Ketoglutaric (C) +0.2 +0.4 +0.5 N.D. N.D.
carbon source acetate (C) +0.1 +1.0 +0.5 N.D. N.D.
carbon source acetate (C) -0.2 +1.5 +0.8 N.D. N.D.
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