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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_11560 and AO353_11565 are separated by 85 nucleotides
AO353_11565 and AO353_11570 are separated by 88 nucleotides
AO353_11570 and AO353_11575 are separated by 147 nucleotides
AO353_11575 and AO353_11580 are separated by 100 nucleotides
AO353_11560: AO353_11560 - hypothetical protein, at 2,554,874 to 2,555,398
_11560
AO353_11565: AO353_11565 - Crp/Fnr family transcriptional regulator, at 2,555,484 to 2,556,170
_11565
AO353_11570: AO353_11570 - transcriptional regulator, at 2,556,259 to 2,556,624
_11570
AO353_11575: AO353_11575 - AraC family transcriptional regulator, at 2,556,772 to 2,557,776
_11575
AO353_11580: AO353_11580 - fatty acid desaturase, at 2,557,877 to 2,558,950
_11580
Group
Condition
AO353
_11560
AO353
_11565
AO353
_11570
AO353
_11575
AO353
_11580
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.4
+0.3
-0.5
-1.0
-0.9
carbon source
acetate (C)
-0.4
-0.0
+0.3
-1.1
-0.2
carbon source
L-Citrulline
-0.8
-0.0
-0.2
-0.4
-0.1
nitrogen source
Parabanic Acid (N)
-0.4
+0.0
-0.1
-0.3
-0.3
motility
outer cut, LB soft agar motility assay
-0.3
-0.1
+0.3
-0.6
-0.2
carbon source
L-Valine (C)
-0.2
-0.6
-0.0
+0.1
-0.2
stress
Paraquat dichloride 0.032 mg/mL
+0.1
-0.5
-0.2
-0.1
-0.1
stress
Cisplatin 0.006 mg/ml
-0.7
+0.1
+0.0
-0.2
+0.0
pH
Minimal media pH9
-0.2
-0.3
-0.3
+0.2
-0.1
carbon source
Tween 20 (C)
-0.5
-0.1
+0.2
+0.2
-0.3
carbon source
L-Ornithine
+0.1
-0.4
-0.5
+0.3
+0.0
carbon source
L-Phenylalanine (C)
-0.9
-0.0
+0.1
+0.1
+0.2
carbon source
L-Serine (C)
-0.4
-0.2
+0.1
+0.3
-0.2
stress
Thallium(I) acetate 0.008 mg/ml
-0.5
+0.2
+0.2
-0.1
-0.2
denitrifying
Nitrate reduction, replicate B
-0.5
-0.1
-0.2
+0.2
+0.4
denitrifying
Nitrate reduction, replicate C
+0.3
-0.0
-0.1
-0.4
+0.2
lb
LB
-0.3
+0.3
+0.2
-0.3
+0.2
stress
Furfuryl Alcohol 0.25 vol%
+0.2
+0.2
-0.1
+0.1
-0.4
motility
outer cut, LB soft agar motility assay
+0.5
+0.1
+0.1
-0.4
-0.0
carbon source
L-Citrulline
-0.4
-0.0
-0.1
+0.6
+0.2
nitrogen source
D-Serine (N)
+0.4
-0.3
-0.1
+0.1
+0.2
stress
Nalidixic 0.004 mg/ml
-0.4
+0.4
-0.1
+0.2
+0.2
carbon source
D-Glucose
+0.4
+0.1
-0.4
+0.4
-0.1
stress
Doxycycline hyclate 0.0002 mg/ml
+0.0
+0.4
+0.2
+0.2
-0.1
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.6
+0.3
-0.3
+0.3
-0.0
carbon source
L-Tryptophan (C)
+0.1
+0.3
+0.3
+0.3
-0.1
carbon source
propionate (C)
+0.4
-0.1
+0.2
-0.1
+0.5
stress
Cholin acetate 38 mM
+0.3
+0.5
+0.1
-0.0
+0.2
carbon source
L-Citrulline
+0.6
+0.1
-0.0
+0.3
+0.5
stress
Doxycycline hyclate 0.0006 mg/ml
-0.2
+1.0
-0.1
+0.5
+0.7
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