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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_11530 and AO353_11535 are separated by 313 nucleotides
AO353_11535 and AO353_11540 are separated by 75 nucleotides
AO353_11540 and AO353_11545 are separated by 71 nucleotides
AO353_11545 and AO353_11550 are separated by 13 nucleotides
AO353_11530: AO353_11530 - diguanylate cyclase, at 2,548,507 to 2,550,426
_11530
AO353_11535: AO353_11535 - hypothetical protein, at 2,550,740 to 2,550,922
_11535
AO353_11540: AO353_11540 - ABC transporter permease, at 2,550,998 to 2,552,011
_11540
AO353_11545: AO353_11545 - sulfate ABC transporter permease, at 2,552,083 to 2,552,901
_11545
AO353_11550: AO353_11550 - sulfate ABC transporter permease, at 2,552,915 to 2,553,787
_11550
Group
Condition
AO353
_11530
AO353
_11535
AO353
_11540
AO353
_11545
AO353
_11550
motility
outer cut, LB soft agar motility assay
-2.2
N.D.
-0.5
-0.7
-0.2
motility
outer cut, LB soft agar motility assay
-2.1
N.D.
-0.5
-0.1
-0.2
carbon source
L-Phenylalanine (C)
-1.5
N.D.
-0.1
-0.4
-0.2
motility
outer cut, LB soft agar motility assay
-2.0
N.D.
-0.2
-0.1
+0.2
pH
Minimal media pH6
-1.4
N.D.
-0.4
+0.0
-0.2
temperature
LB 20C
-1.5
N.D.
-0.1
+0.0
-0.2
carbon source
Tween 20 (C)
-1.0
N.D.
-0.2
-0.4
-0.1
carbon source
L-Lactate (C)
-1.2
N.D.
-0.2
-0.3
+0.1
carbon source
D-Alanine (C)
-1.7
N.D.
-0.1
+0.3
-0.0
stress
Lomefloxacin 0.001 mM
-0.9
N.D.
+0.1
-0.6
-0.1
carbon source
L-Valine (C)
-1.3
N.D.
-0.3
+0.2
-0.2
carbon source
propionate (C)
-1.5
N.D.
-0.1
+0.2
-0.0
carbon source
propionate (C)
-1.4
N.D.
+0.1
-0.3
+0.2
stress
methylglyoxal 0.009 vol%
-1.5
N.D.
+0.1
-0.1
+0.1
carbon source
L-Ornithine
-0.7
N.D.
+0.3
-0.4
-0.4
stress
Tetracycline 0.0008 mg/ml
-1.4
N.D.
+0.2
+0.1
+0.0
carbon source
L-Tryptophan (C)
-1.6
N.D.
-0.1
+0.5
+0.3
stress
Cobalt chloride 0.32 mM
-0.9
N.D.
-0.4
+0.5
+0.1
nitrogen source
Parabanic Acid (N)
-1.3
N.D.
+0.0
+0.4
+0.2
stress
Cisplatin 0.006 mg/ml
-0.4
N.D.
-0.0
+0.7
+0.5
lb
LB
+1.3
N.D.
+0.1
+0.3
+0.1
stress
acetate 68 mM
+2.1
N.D.
+0.6
+0.4
+0.1
stress
1-ethyl-3-methylimidazolium acetate 30 mM
+2.8
N.D.
+0.6
+0.6
-0.1
stress
Cholin acetate 38 mM
+2.9
N.D.
+1.1
+0.6
+0.2
stress
Cholin acetate 10 mM
+3.6
N.D.
+1.0
+0.6
+0.1
stress
acetate 17 mM
+4.4
N.D.
+0.8
+0.3
+0.2
stress
Cholin acetate 19 mM
+4.1
N.D.
+0.9
+0.6
+0.3
stress
1-ethyl-3-methylimidazolium acetate 15 mM
+4.4
N.D.
+1.2
+0.6
+0.1
stress
acetate 34 mM
+4.7
N.D.
+1.0
+0.5
+0.3
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+4.7
N.D.
+1.2
+0.7
+0.2
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AO353_11540
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