Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_11495 and AO353_11500 are separated by 167 nucleotidesAO353_11500 and AO353_11505 are separated by 349 nucleotidesAO353_11505 and AO353_11510 are separated by 176 nucleotidesAO353_11510 and AO353_11515 are separated by 136 nucleotides AO353_11495: AO353_11495 - integrase, at 2,539,738 to 2,540,973 _11495 AO353_11500: AO353_11500 - tRNA-Arg, at 2,541,141 to 2,541,217 _11500 AO353_11505: AO353_11505 - succinate-semialdehyde dehydrogenase (EC 1.2.1.16) (from data), at 2,541,567 to 2,543,009 _11505 AO353_11510: AO353_11510 - 5-aminovalerate transaminase (EC 2.6.1.48) (from data), at 2,543,186 to 2,544,463 _11510 AO353_11515: AO353_11515 - histidine kinase, at 2,544,600 to 2,545,814 _11515
Group Condition AO353_11495 AO353_11500 AO353_11505 AO353_11510 AO353_11515
carbon source Putrescine (C) +0.1 N.D. -3.5 -0.9 +0.0
nitrogen source Putrescine (N) +0.0 N.D. -3.1 -1.2 +0.1
carbon source L-Citrulline (C) -0.0 N.D. -1.4 -0.7 -0.4
nitrogen source L-Lysine (N) +0.0 N.D. -0.7 -1.5 -0.3
pH Minimal media pH9 -0.1 N.D. -1.5 -0.4 -0.2
carbon source L-Arginine (C) -0.0 N.D. -1.3 -0.4 -0.3
nitrogen source L-Lysine (N) -0.1 N.D. -0.4 -1.2 -0.1
carbon source L-Valine (C) +0.1 N.D. -0.7 -0.8 -0.4
carbon source L-Arginine (C) -0.1 N.D. -1.4 -0.3 +0.1
carbon source acetate (C) +0.0 N.D. -0.6 -0.2 -0.4
nitrogen source L-Citrulline (N) -0.0 N.D. -0.5 -0.4 -0.2
anaerobic N1B4wt with N2E3m denitrifying replicate C -0.1 N.D. -0.1 -0.1 -0.6
stress Fusidic 0.125 mg/ml -0.2 N.D. -0.1 -0.2 -0.4
carbon source acetate (C) +0.1 N.D. -0.7 -0.2 -0.1
pH Minimal media pH9 +0.1 N.D. -0.5 -0.4 +0.1
motility outer cut, LB soft agar motility assay -0.3 N.D. +0.3 -0.3 -0.3
carbon source L-Isoleucine (C) +0.1 N.D. -0.6 +0.0 +0.3
motility outer cut, LB soft agar motility assay -0.1 N.D. -0.1 -0.4 +0.5
carbon source L-Ornithine -0.0 N.D. -0.4 +0.7 +0.1
carbon source L-Ornithine -0.1 N.D. -0.1 +0.6 +0.2
stress Paraquat dichloride 0.032 mg/mL -0.2 N.D. +0.6 +0.4 -0.1
survival 4C survival; 672 hrs -0.1 N.D. -0.0 +0.0 +0.9
carbon source L-Citrulline -0.2 N.D. +0.5 +0.3 +0.2
carbon source L-Ornithine +0.1 N.D. -0.5 +0.9 +0.4
denitrifying Nitrate reduction, replicate B +0.1 N.D. +0.4 +0.5 -0.0
carbon source L-Citrulline -0.0 N.D. +0.3 +0.3 +0.5
carbon source D-Glucose -0.2 N.D. +0.7 +0.5 -0.0
carbon source L-Citrulline -0.0 N.D. +0.5 +0.7 -0.0
carbon source L-Ornithine +0.1 N.D. +0.2 +1.0 +0.3
carbon source D-Glucose -0.0 N.D. +0.8 +0.8 +0.2
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